Literature DB >> 34308434

Estimating Uncertainty in White Matter Tractography Using Wild Non-local Bootstrap.

Pew-Thian Yap1, Hongyu An1, Yasheng Chen1, Dinggang Shen1.   

Abstract

Statistics derived from diffusion MRI data, especially those related to tractography, are often highly non-linear and non-Gaussian with unknown complex distributions. In estimating the sampling distributions of these statistics, many existing techniques are limited by their reliance on models that assume normality and that are yet to be verified in complex situations where various noise sources, such as physiologic variation, scanner instability, and imaging noise, might be simultaneously present. In complex conditions as such, a viable solution is the bootstrap, which due to its distribution-independent nature is an appealing tool for the estimation of the variability of almost any statistic, without relying on complicated theoretical calculations, but purely on computer simulation. In this paper, we will examine whether a new bootstrap scheme, called the wild non-local bootstrap (W-NLB), is effective in estimating the uncertainty in tractography data. In contrast to the residual or wild bootstrap, which relies on a predetermined data model, or the repetition bootstrap, which requires repeated signal measurements, W-NLB does not assume a predetermined form of data structure and obviates the need for time-consuming multiple acquisitions. W-NLB hinges on the observation that local imaging information recurs in the image. This self-similarity implies that imaging information coming from spatially distant (non-local) regions can be exploited for more effective estimation of statistics of interest. In silico evaluations indicate that W-NLB produces distribution estimates that are in closer agreement to those generated using Monte Carlo simulations, compared with the conventional residual bootstrap. Evaluations using in vivo data show that W-NLB produces results that are in agreement with our knowledge on the white matter connection architecture.

Year:  2013        PMID: 34308434      PMCID: PMC8302449          DOI: 10.1007/978-3-319-02475-2_13

Source DB:  PubMed          Journal:  Comput Diffus MRI Brain Connect (2013)


  17 in total

1.  Fiber tract-based atlas of human white matter anatomy.

Authors:  Setsu Wakana; Hangyi Jiang; Lidia M Nagae-Poetscher; Peter C M van Zijl; Susumu Mori
Journal:  Radiology       Date:  2003-11-26       Impact factor: 11.105

2.  Determining and visualizing uncertainty in estimates of fiber orientation from diffusion tensor MRI.

Authors:  Derek K Jones
Journal:  Magn Reson Med       Date:  2003-01       Impact factor: 4.668

3.  The non-local bootstrap--estimation of uncertainty in diffusion MRI.

Authors:  Pew-Thian Yap; Hongyu An; Yasheng Chen; Dinggang Shen
Journal:  Inf Process Med Imaging       Date:  2013

4.  Noise removal in magnetic resonance diffusion tensor imaging.

Authors:  Bin Chen; Edward W Hsu
Journal:  Magn Reson Med       Date:  2005-08       Impact factor: 4.668

5.  Reproducibility of quantitative tractography methods applied to cerebral white matter.

Authors:  Setsu Wakana; Arvind Caprihan; Martina M Panzenboeck; James H Fallon; Michele Perry; Randy L Gollub; Kegang Hua; Jiangyang Zhang; Hangyi Jiang; Prachi Dubey; Ari Blitz; Peter van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2007-03-20       Impact factor: 6.556

6.  Tractography gone wild: probabilistic fibre tracking using the wild bootstrap with diffusion tensor MRI.

Authors:  Derek K Jones
Journal:  IEEE Trans Med Imaging       Date:  2008-09       Impact factor: 10.048

7.  Probabilistic fiber tracking using the residual bootstrap with constrained spherical deconvolution.

Authors:  Ben Jeurissen; Alexander Leemans; Derek K Jones; Jacques-Donald Tournier; Jan Sijbers
Journal:  Hum Brain Mapp       Date:  2011-03       Impact factor: 5.038

8.  Adaptive non-local means denoising of MR images with spatially varying noise levels.

Authors:  José V Manjón; Pierrick Coupé; Luis Martí-Bonmatí; D Louis Collins; Montserrat Robles
Journal:  J Magn Reson Imaging       Date:  2010-01       Impact factor: 4.813

9.  "Squashing peanuts and smashing pumpkins": how noise distorts diffusion-weighted MR data.

Authors:  Derek K Jones; Peter J Basser
Journal:  Magn Reson Med       Date:  2004-11       Impact factor: 4.668

10.  A Bayesian framework for global tractography.

Authors:  S Jbabdi; M W Woolrich; J L R Andersson; T E J Behrens
Journal:  Neuroimage       Date:  2007-04-27       Impact factor: 6.556

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