| Literature DB >> 34307160 |
Peng Wang1, Yanwei Liu1, Lin Zhi1, Xiaoguang Qiu1,2.
Abstract
PURPOSE: Current studies and guidelines suggest that the biobehavior of IDH-wild type (IDH-wt) lower-grade glioma (LGG, WHO II-III) is similar to IDH-wt glioblastoma (GBM). However, differences in their clinical and molecular characteristics have not been reported. This study aimed to analyze the clinical and genetic information of gliomas with IDH-wt.Entities:
Keywords: Glioblastoma; IDH wild-type; Lower-grade glioma; molecular pathology; whole exome sequencing
Year: 2021 PMID: 34307160 PMCID: PMC8294328 DOI: 10.3389/fonc.2021.696214
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Characteristics of clinical and molecular in this study.
| Characteristics | II-III grade (IDH wild-type) | Primary GBM (IDH wild-type) | P value |
|---|---|---|---|
| Total | 165 (42.4%) | 224 (56%) | NA |
| Age | 42 (18-74) | 51 (18-79) | <0.01 |
| Gender | 0.296 | ||
| Male | 99 (60.0%) | 146 (65.2%) | |
| Female | 66 (40.0%) | 78 (34.8) | |
| Resection | 0.018 | ||
| Total resection | 77 (46.7%) | 135 (60.3%) | |
| Subtotal resection | 74 (44.8%) | 78 (34.8%) | |
| NA | 14 (8.5%) | 11 (4.9%) | |
| Tumor location | 0.264 | ||
| Multi lobe | 56 (33.9%) | 74 (33.0%) | |
| Single lobe | 78 (47.3%) | 79 (35.3%) | |
| NA | 31 (18.8%) | 71 (31.7%) | |
| Symptom | <0.001 | ||
| Seizure | 82 (49.7%) | 50 (22.3%) | |
| No seizure | 69 (41.8%) | 153 (68.3%) | |
| NA | 14 (8.5%) | 21 (9.4%) | |
| Radiotherapy | 0.072 | ||
| Yes | 134 (81.2%) | 190 (84.8%) | |
| No | 27 (16.4%) | 22 (9.8%) | |
| NA | 4 (2.4%) | 12 (5.4%) | |
| Chemotherapy | <0.001 | ||
| Yes | 80 (48.5%) | 159 (71.0%) | |
| No | 78 (47.3%) | 56 (25.0%) | |
| NA | 7 (4.2%) | 9 (4%) | |
| Median PFS (Mo) | 44 | 9.767 | <0.001 |
| Median OS (Mo) | 55 | 14.83 | <0.001 |
| 1p/19q codeletion | NA | ||
| Yes | 0 (0%) | 0 (0%) | |
| No | 51 (30.9%) | 106 (47.3%) | |
| NA | 114 (69.1%) | 118 (52.7%) | |
| MGMT methylation | 0.520 | ||
| Yes | 25 (15.2%) | 69 (30.8%) | |
| No | 42 (25.5%) | 140 (62.5%) | |
| NA | 98 (59.4%) | 15 (6.7%) | |
| PETN | 0.010 | ||
| Yes (wild) | 88 (53.3%) | 79 (35.3%) | |
| No (mutant) | 8 (5.0%) | 26 (11.6%) | |
| NA | 69 (41.7%) | 119 (53.1%) | |
| P53 | 0.518 | ||
| Yes (wild) | 87 (52.7%) | 88 (39.3%) | |
| No (mutant) | 13 (7.9%) | 17 (7.6%) | |
| NA | 65 (39.4%) | 119 (53.1%) | |
| TERT | 0.991 | ||
| Mutant | 12 (7.3%) | 22 (9.8%) | |
| Wild | 17 (10.3%) | 31 (13.8%) | |
| NA | 136 (82.4%) | 171 (76.4%) | |
| EGFR | 0.204 | ||
| Amplification | 7 (4.2%) | 14 (6.3%) | |
| Wild | 125 (75.8%) | 138 (61.6%) | |
| NA | 33 (20%) | 72 (32.1%) |
Figure 1The Log-rank test and Gehan-Breslow-Wilcoxon test for overall survival (OS) (A) and progression-free survival (PFS) (B) indicate that IDH-wt LGG was associated with longer overall survival (P < 0.001) and longer progression-free survival (P < 0.001) than IDH-wt GBM.
Figure 2Supervised cluster analysis of the gene sequencing data. We obtained gene heat maps describing gene expression in the different patient groups and found that there were obvious differences in gene expression levels and gene expression types between IDH-wt LGG patients and IDH-wt GBM patients.
Figure 3Functional enrichment analysis of associated genes for LGG (A) and GBM (B), indicating the functional roles of the gene sets in the different subgroups. Enrichment results for biological processes were obtained from the GO database. The orders of the biological processes listed in the bubble chart are based on the number of targets annotated in biological process (BP).
Figure 4Patient gene expression analysis was performed using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database provided by the DAVID website for correlation analysis. The orders of the biological processes listed in the bubble chart are based on the number of targets annotated in biological process (BP).
Multivariate analysis results for LGG and GBM patients.
| Event | B | P | OR | 95% CR CI | ||
|---|---|---|---|---|---|---|
| LGG | OS | MGMT | 1.239 | <0.001 | 3.453 | 2.007–5.940 |
| TERT | −1.522 | 0.005 | 0.218 | 0.075–0.634 | ||
| TP53 | 1.142 | 0.002 | 3.134 | 1.542–6.446 | ||
| Radiotherapy | −1.538 | 0.199 | 0.215 | 0.021–2.247 | ||
| Chemotherapy | 0.331 | 0.744 | 1.393 | 0.190–10.204 | ||
| Age | 0.023 | 0.01 | 1.023 | 1.005–1.040 | ||
| PFS | MGMT | 1.249 | <0.001 | 3.487 | 2.076–5.856 | |
| TERT | −0.687 | 0.006 | 0.503 | 0.307–0.824 | ||
| TP53 | 0.445 | 0.012 | 1.561 | 1.104–2.208 | ||
| Radiotherapy | −1.507 | 0.208 | 0.222 | 0.021–2.315 | ||
| Chemotherapy | 0.474 | 0.64 | 1.606 | 0.220–11.731 | ||
| Age | 0.029 | <0.001 | 1.03 | 1.013–1.047 | ||
| GBM | OS | MGMT | 0.76 | 0.013 | 2.139 | 1.174–3.897 |
| PTEN | −0.709 | 0.038 | 0.492 | 0.252–0.961 | ||
| Resection | −0.575 | 0.004 | 0.562 | 0.277–1.141 | ||
| Radiotherapy | −0.402 | 0.006 | 0.669 | 0.190–2.360 | ||
| Chemotherapy | 1.395 | 0.001 | 4.037 | 0.890–18.302 | ||
| Age | 0.014 | 0.026 | 1.014 | 1.002–1.027 | ||
| PFS | Resection | −0.435 | 0.005 | 0.647 | 0.319–1.311 | |
| Radiotherapy | −0.391 | 0.009 | 0.677 | 0.190–2.406 | ||
| Chemotherapy | 1.626 | 0.033 | 5.084 | 1.139–22.692 | ||
| Age | 0.014 | 0.03 | 1.014 | 1.001–1.026 |
Figure 5Supervised cluster analysis of gene expression in GBM patients shows it suits the Verhaak’s classes well.