Literature DB >> 34302617

cFos-ANAB: A cFos-based Web Tool for Exploring Activated Neurons and Associated Behaviors.

Fan Wang1, Wenjie Sun2, Lei Chang2, Kefang Sun2, Leying Hou2, Linna Qian2, Chaoyin Jin2, Jiandong Chen2, Jiali Pu3, Panmeng Ye4, Shuang Qiu1, Jianhong Luo1, Shumin Duan1, Baorong Zhang5, Zhihua Gao6, Xiaojun Hu7,8.   

Abstract

cFos is one of the most widely-studied genes in the field of neuroscience. Currently, there is no systematic database focusing on cFos in neuroscience. We developed a curated database-cFos-ANAB-a cFos-based web tool for exploring activated neurons and associated behaviors in rats and mice, comprising 398 brain nuclei and sub-nuclei, and five associated behaviors: pain, fear, feeding, aggression, and sexual behavior. Direct relationships among behaviors and nuclei (even cell types) under specific stimulating conditions were constructed based on cFos expression profiles extracted from original publications. Moreover, overlapping nuclei and sub-nuclei with potentially complex functions among different associated behaviors were emphasized, leading to results serving as important clues to the development of valid hypotheses for exploring as yet unknown circuits. Using the analysis function of cFos-ANAB, multi-layered pictures of networks and their relationships can quickly be explored depending on users' purposes. These features provide a useful tool and good reference for early exploration in neuroscience. The cFos-ANAB database is available at www.cfos-db.net .
© 2021. Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences.

Entities:  

Keywords:  Behavior; Brain nucleus; Curated database; Stimulus; Visualization tools; cFos expression

Mesh:

Substances:

Year:  2021        PMID: 34302617      PMCID: PMC8490591          DOI: 10.1007/s12264-021-00744-2

Source DB:  PubMed          Journal:  Neurosci Bull        ISSN: 1995-8218            Impact factor:   5.271


  20 in total

Review 1.  GENSAT: a genomic resource for neuroscience research.

Authors:  Dan Geschwind
Journal:  Lancet Neurol       Date:  2004-02       Impact factor: 44.182

2.  GenePaint.org: an atlas of gene expression patterns in the mouse embryo.

Authors:  Axel Visel; Christina Thaller; Gregor Eichele
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 3.  Regulation and function of immediate-early genes in the brain: beyond neuronal activity markers.

Authors:  Hiroyuki Okuno
Journal:  Neurosci Res       Date:  2010-12-14       Impact factor: 3.304

4.  Genome-wide atlas of gene expression in the adult mouse brain.

Authors:  Ed S Lein; Michael J Hawrylycz; Nancy Ao; Mikael Ayres; Amy Bensinger; Amy Bernard; Andrew F Boe; Mark S Boguski; Kevin S Brockway; Emi J Byrnes; Lin Chen; Li Chen; Tsuey-Ming Chen; Mei Chi Chin; Jimmy Chong; Brian E Crook; Aneta Czaplinska; Chinh N Dang; Suvro Datta; Nick R Dee; Aimee L Desaki; Tsega Desta; Ellen Diep; Tim A Dolbeare; Matthew J Donelan; Hong-Wei Dong; Jennifer G Dougherty; Ben J Duncan; Amanda J Ebbert; Gregor Eichele; Lili K Estin; Casey Faber; Benjamin A Facer; Rick Fields; Shanna R Fischer; Tim P Fliss; Cliff Frensley; Sabrina N Gates; Katie J Glattfelder; Kevin R Halverson; Matthew R Hart; John G Hohmann; Maureen P Howell; Darren P Jeung; Rebecca A Johnson; Patrick T Karr; Reena Kawal; Jolene M Kidney; Rachel H Knapik; Chihchau L Kuan; James H Lake; Annabel R Laramee; Kirk D Larsen; Christopher Lau; Tracy A Lemon; Agnes J Liang; Ying Liu; Lon T Luong; Jesse Michaels; Judith J Morgan; Rebecca J Morgan; Marty T Mortrud; Nerick F Mosqueda; Lydia L Ng; Randy Ng; Geralyn J Orta; Caroline C Overly; Tu H Pak; Sheana E Parry; Sayan D Pathak; Owen C Pearson; Ralph B Puchalski; Zackery L Riley; Hannah R Rockett; Stephen A Rowland; Joshua J Royall; Marcos J Ruiz; Nadia R Sarno; Katherine Schaffnit; Nadiya V Shapovalova; Taz Sivisay; Clifford R Slaughterbeck; Simon C Smith; Kimberly A Smith; Bryan I Smith; Andy J Sodt; Nick N Stewart; Kenda-Ruth Stumpf; Susan M Sunkin; Madhavi Sutram; Angelene Tam; Carey D Teemer; Christina Thaller; Carol L Thompson; Lee R Varnam; Axel Visel; Ray M Whitlock; Paul E Wohnoutka; Crissa K Wolkey; Victoria Y Wong; Matthew Wood; Murat B Yaylaoglu; Rob C Young; Brian L Youngstrom; Xu Feng Yuan; Bin Zhang; Theresa A Zwingman; Allan R Jones
Journal:  Nature       Date:  2006-12-06       Impact factor: 49.962

Review 5.  The Allen Brain Atlas: 5 years and beyond.

Authors:  Allan R Jones; Caroline C Overly; Susan M Sunkin
Journal:  Nat Rev Neurosci       Date:  2009-10-14       Impact factor: 34.870

6.  The immediate early genes, c-fos, c-jun and AP-1, are early markers of platinum analogue toxicity in human proximal tubular cell primary cultures.

Authors:  Richard David Wainford; Richard J Weaver; Gabrielle M Hawksworth
Journal:  Toxicol In Vitro       Date:  2009-04-19       Impact factor: 3.500

Review 7.  c-Fos and related immediate early gene products as markers of activity in neuroendocrine systems.

Authors:  G E Hoffman; M S Smith; J G Verbalis
Journal:  Front Neuroendocrinol       Date:  1993-07       Impact factor: 8.606

Review 8.  Mouse maps of gene expression in the brain.

Authors:  Susan E Koester; Thomas R Insel
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

9.  A novel cortico-intrathalamic circuit for flight behavior.

Authors:  Ping Dong; Hao Wang; Xiao-Fan Shen; Ping Jiang; Xu-Tao Zhu; Yue Li; Jia-Hao Gao; Shan Lin; Yue Huang; Xiao-Bin He; Fu-Qiang Xu; Shumin Duan; Hong Lian; Hao Wang; Jiadong Chen; Xiao-Ming Li
Journal:  Nat Neurosci       Date:  2019-04-29       Impact factor: 28.771

10.  Enhanced and unified anatomical labeling for a common mouse brain atlas.

Authors:  Uree Chon; Daniel J Vanselow; Keith C Cheng; Yongsoo Kim
Journal:  Nat Commun       Date:  2019-11-07       Impact factor: 14.919

View more
  1 in total

Review 1.  Neural Control of Action Selection Among Innate Behaviors.

Authors:  Xinyu Jiang; Yufeng Pan
Journal:  Neurosci Bull       Date:  2022-05-28       Impact factor: 5.203

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.