Literature DB >> 34286030

Generation of microRNA Sponge Library.

Sebastian Herzog1.   

Abstract

This protocol describes the generation and functional validation of microRNA (miRNA) sponge or decoy constructs. When expressed from a strong promoter, these transcripts can sequester specific miRNA:RISC complexes, thereby resulting in a derepression of endogenous target mRNA. Hence, cells expressing such sponges display a partial or full miRNA loss-of-function phenotype. Depending on the sponge sequence, the activity of any miRNA of choice can be inhibited by sponge sequestration, but it should be noted that these constructs do not seem to be specific for one particular miRNA. Rather, all miRNAs of the same family as defined by the seed sequence will be affected, albeit to a different degree.
Copyright © 2018 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  miRNA; microRNA; microRNA decoy; microRNA inhibition; microRNA knockdown; microRNA sponge

Year:  2018        PMID: 34286030      PMCID: PMC8275218          DOI: 10.21769/BioProtoc.2820

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  8 in total

1.  Silencing of microRNAs in vivo with 'antagomirs'.

Authors:  Jan Krützfeldt; Nikolaus Rajewsky; Ravi Braich; Kallanthottathil G Rajeev; Thomas Tuschl; Muthiah Manoharan; Markus Stoffel
Journal:  Nature       Date:  2005-10-30       Impact factor: 49.962

2.  Concatemer chain reaction: a Taq DNA polymerase-mediated mechanism for generating long tandemly repetitive DNA sequences.

Authors:  M J White; B W Fristensky; W F Thompson
Journal:  Anal Biochem       Date:  1991-12       Impact factor: 3.365

3.  MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells.

Authors:  Margaret S Ebert; Joel R Neilson; Phillip A Sharp
Journal:  Nat Methods       Date:  2007-08-12       Impact factor: 28.547

4.  Stable knockdown of microRNA in vivo by lentiviral vectors.

Authors:  Bernhard Gentner; Giulia Schira; Alice Giustacchini; Mario Amendola; Brian D Brown; Maurilio Ponzoni; Luigi Naldini
Journal:  Nat Methods       Date:  2008-11-30       Impact factor: 28.547

5.  The miR-15 family reinforces the transition from proliferation to differentiation in pre-B cells.

Authors:  Silke E Lindner; Michael Lohmüller; Bianka Kotkamp; Fabian Schuler; Zeynep Knust; Andreas Villunger; Sebastian Herzog
Journal:  EMBO Rep       Date:  2017-07-13       Impact factor: 8.807

6.  CRISPR/cas9, a novel genomic tool to knock down microRNA in vitro and in vivo.

Authors:  Hong Chang; Bin Yi; Ruixia Ma; Xiaoguo Zhang; Hongyou Zhao; Yaguang Xi
Journal:  Sci Rep       Date:  2016-02-29       Impact factor: 4.379

7.  An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs.

Authors:  Tzu-Hao Chang; Hsi-Yuan Huang; Justin Bo-Kai Hsu; Shun-Long Weng; Jorng-Tzong Horng; Hsien-Da Huang
Journal:  BMC Bioinformatics       Date:  2013-01-21       Impact factor: 3.169

8.  Lentivirus-mediated antagomir expression for specific inhibition of miRNA function.

Authors:  Michaela Scherr; Letizia Venturini; Karin Battmer; Michael Schaller-Schoenitz; Daniel Schaefer; Iris Dallmann; Arnold Ganser; Matthias Eder
Journal:  Nucleic Acids Res       Date:  2007-11-19       Impact factor: 16.971

  8 in total

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