| Literature DB >> 34284736 |
Yunxiang Tang1, Ruike Zhang1, Yinan Li1, Shuyu Xu1, Hao Wang1, Jingzhou Xu1, Lei Xiao1, Yajing Wang1, Jing Du1, Yujia Huang1, Tong Su2.
Abstract
BACKGROUND: Patients with lung cancer (LC) have a poor quality of life (QoL) and easily suffer from psychological diseases. Previous studies focused less on the relationship between genetic factors and QoL, depression, and anxiety status in LC patients. The current study is intended to explore the relationship between SNPs and haplotypes of ERCC1 and ERCC2 and the QoL, depression and anxiety status of patients with LC.Entities:
Keywords: Anxiety; Depression; ERCC1; ERCC2; Lung cancer; Quality of life; Single nucleotide polymorphism
Year: 2021 PMID: 34284736 PMCID: PMC8293557 DOI: 10.1186/s12885-021-08570-5
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Genotype distribution of tagSNPs in ERCC1 and ERCC2
| Gene | SNPs | n | % |
|---|---|---|---|
| ERCC1 | rs11615 | ||
| GG (CC) | 159 | 54.6 | |
| GA (CT) | 115 | 39.5 | |
| AA (TT) | 17 | 5.8 | |
| ERCC1 | rs762562 | ||
| AA | 95 | 32.6 | |
| GA | 148 | 50.9 | |
| GG | 48 | 16.5 | |
| ERCC1 | rs3212986 | ||
| CC | 125 | 43.0 | |
| CA | 140 | 48.1 | |
| AA | 26 | 8.9 | |
| ERCC2 | rs13181 | ||
| TT | 245 | 84.2 | |
| GT | 43 | 14.8 | |
| GG | 3 | 1.0 | |
| ERCC2 | rs171140 | ||
| AA | 86 | 29.6 | |
| CA | 140 | 48.1 | |
| CC | 65 | 22.3 | |
| ERCC2 | rs238416 | ||
| CC | 82 | 28.2 | |
| CT | 152 | 52.2 | |
| TT | 57 | 19.6 | |
| ERCC2 | rs3916874 | ||
| CC | 192 | 66.0 | |
| GC | 87 | 29.9 | |
| GG | 12 | 4.1 | |
| ERCC2 | rs50871 | ||
| AA | 143 | 49.1 | |
| CA | 120 | 41.2 | |
| CC | 28 | 9.6 | |
| ERCC2 | rs50872 | ||
| GG | 194 | 66.7 | |
| GA | 88 | 30.2 | |
| AA | 9 | 3.1 |
Haplotypes of ERCC1, ERCC2 gene
| Gene | SNPs | Haplotype | Quantity | Frequency* |
|---|---|---|---|---|
| ERCC1 | rs762562-rs3212986 | GC (ref) | 243 | 0.4175 |
| ERCC1 | rs762562-rs3212986 | AA | 191 | 0.3282 |
| ERCC1 | rs762562-rs3212986 | AC | 147 | 0.2526 |
| ERCC1 | rs3212986-rs11615 | CG (ref) | 242 | 0.4158 |
| ERCC1 | rs3212986-rs11615 | AG | 191 | 0.3282 |
| ERCC1 | rs3212986-rs11615 | CA | 148 | 0.2543 |
| ERCC2 | rs13181-rs3916874-rs238416 | TCT (ref) | 266 | 0.4570 |
| ERCC2 | rs13181-rs3916874-rs238416 | TCC | 156 | 0.2680 |
| ERCC2 | rs13181-rs3916874-rs238416 | TGC | 111 | 0.1907 |
| ERCC2 | rs13181-rs3916874-rs238416 | GCC | 49 | 0.0842 |
Note: when calculating the frequency, the numerator = the corresponding number of haplotype, denominator = 2 * sample size. * means multiplication
Associations between single SNP of ERCC1 and ERCC2 gene and Quality of Life, depression and anxiety (unadjusted and adjusted for Environmental factors)
| Area | SNP | Gene | Ref/Alt | Model | Beta (95%CI) aor | Bofferoni adjusted | Environmental factors correction | |||
|---|---|---|---|---|---|---|---|---|---|---|
| Beta (95%CI) aor | Bofferoni adjusted | |||||||||
| C30 Emotional functions | rs11615 | ERCC1 | G/A | Additive | 6.34 (2.09–10.59) | 6.85 (2.38–11.31) | ||||
| C30 Fatigue | rs11615 | ERCC1 | G/A | Additive | 0.62 (0.39–0.98) | 0.369 | – | – | – | |
| LC13 Dysphagia | rs11615 | ERCC1 | G/A | Additive | 0.20 (0.047–0.88) | 0.297 | 0.18 (0.04–0.87) | 0.297 | ||
| SAS Anxiety standard score | rs11615 | ERCC1 | G/A | Additive | −1.94 (−3.66--0.22) | 0.252 | −2.06 (−3.85--0.27) | 0.225 | ||
| C30 Cognitive functions | rs3212986 | ERCC1 | C/A | Additive | −5.72 (−10.15--1.31) | 0.108 | −6.18 (−10.74--1.62) | 0.072 | ||
| C30 Physical functions | rs3212986 | ERCC1 | C/A | Additive | −5.43 (−9.68--1.18) | 0.117 | −5.98 (−10.40--1.56) | 0.072 | ||
| C30 Fatigue | rs3212986 | ERCC1 | C/A | Additive | 1.52 (1.02–2.28) | 0.378 | – | – | – | |
| LC13 Dysphagia | rs3212986 | ERCC1 | C/A | Additive | 2.31 (1.02–5.22) | 0.405 | 4.87 (1.43–16.62) | 0.099 | ||
| SDS depression standard score | rs3212986 | ERCC1 | C/A | Dominant | 3.07 (0.37–5.77) | 0.234 | 2.96 (0.21–5.71) | 0.324 | ||
| SAS Anxiety standard score | rs3212986 | ERCC1 | C/A | Dominant | 3.09 (1.00–5.18) | 3.41 (1.23–5.57) | ||||
| SAS Anxiety State | rs3212986 | ERCC1 | C/A | Dominant | 1.90 (1.06–3.39) | 0.270 | 2.03 (1.11–3.73) | 0.198 | ||
| LC13 Pain in other parts | rs762562 | ERCC1 | A/G | Additive | 1.60 (1.02–2.51) | 0.378 | 1.73 (1.04–2.86) | 0.306 | ||
| LC13 Chest pain | rs3916874 | ERCC2 | C/G | Additive | 0.48 (0.25–0.93) | 0.261 | – | – | – | |
| SAS Anxiety State | rs13181 | ERCC2 | T/G | Dominant | 0.28 (0.095–0.80) | 0.162 | 0.22 (0.07–0.66) | 0.063 | ||
Ref/Alt:Refer to allele (wild-type allele) / mutant allele. Model:Additive model or Dominant model. Covariates refer to environmental factors including:sex, age, occupation, marriage, education, number of children, smoking history, drinking history, medical insurance, pathological types, clinical stages, metastasis, concurrent symptoms, operation history, and chemotherapy. a β and 95% confidence interval (CI) were reported (Linear regression was used for general health condition and functioning domains, anxiety and depression). b odds ratio (OR) and 95% CI were reported (Logistic regression was used for symptoms domains, anxiety and depression)
Associations between ERCC1 and ERCC2 gene haplotypes and Quality of Life, depression and anxiety (unadjusted and adjusted for Environmental factors)
| Area | Gene | SNPs | Haplotype | Beta (95%CI)a or | Environmental factors correction | ||
|---|---|---|---|---|---|---|---|
| Beta (95%CI)a or | |||||||
| C30 Cognitive functions | ERCC1 | rs762562-rs3212986 | AA | −4.87 (− 9.45--0.29) | − 5.34 (− 10.13--0.56) | ||
| AC | 0.058 | 4.66 (−0.14–9.47) | 0.083 | 4.47 (− 0.56–9.50) | |||
| GC (ref) | – | – | – | – | |||
| C30 Physical functions | ERCC1 | rs762562-rs3212986 | AA | −5.33 (−9.75--0.90) | − 5.89 (−10.53--1.25) | ||
| AC | 0.239 | 2.77 (−1.83–7.38) | 0.202 | 3.22 (−1.71–8.14) | |||
| GC (ref) | – | – | – | – | |||
| LC13 Dysphagia | ERCC1 | rs762562-rs3212986 | AA | 0.165 | 1.80 (0.79–4.10) | 3.32 (1.03–10.66) | |
| AC | 0.063 | 0.31 (0.09–1.06) | 0.133 | 0.33 (0.08–1.40) | |||
| GC (ref) | – | – | – | – | |||
| C30 Emotional functions | ERCC1 | rs3212986-rs11615 | AG | 0.490 | −1.52 (−5.83–2.79) | 0.490 | −1.59 (−6.12–2.93) |
| CA | 6.04 (1.72–10.36) | 6.61 (2.08–11.15) | |||||
| CG (ref) | – | – | – | – | |||
| C30 Cognitive functions | ERCC1 | rs3212986-rs11615 | AG | −5.27 (−9.90--0.63) | −5.42 (− 10.24--0.60) | ||
| CA | 0.075 | 4.38 (−0.43–9.19) | 0.060 | 4.77 (−0.18–9.72) | |||
| CG (ref) | – | – | – | – | |||
| C30 Physical functions | ERCC1 | rs3212986-rs11615 | AG | −6.06 (−10.55--1.57) | −6.55 (− 11.24--1.86) | ||
| CA | 0.178 | 3.17 (−1.43–7.77) | 0.125 | 3.80 (−1.04–8.65) | |||
| CG (ref) | – | – | – | – | |||
| C30 Appetite loss | ERCC1 | rs3212986-rs11615 | AG | 1.57 (1.03–2.40) | 1.67 (1.07–2.61) | ||
| CA | 0.708 | 1.09 (0.70–1.68) | 0.956 | 0.99 (0.62–1.57) | |||
| CG (ref) | – | – | – | – | |||
| LC13 Dysphagia | ERCC1 | rs3212986-rs11615 | AG | 0.068 | 2.18 (0.94–5.05) | 4.43 (1.28–15.39) | |
| CA | 0.19 (0.04–0.82) | 0.17 (0.032–0.88) | |||||
| CG (ref) | – | – | – | – | |||
| SAS Anxiety standard score | ERCC1 | rs3212986-rs11615 | AG | 0.130 | 1.34 (−0.39–3.07) | 0.076 | 1.63 (−0.16–3.41) |
| CA | −2.25 (−4.02- -0.47) | −2.18 (−4.05- -0.32) | |||||
| CG (ref) | – | – | – | – | |||
| C30 Emotional functions | ERCC2 | rs13181-rs3916874-rs238416 | GCC | 6.81 (0.125–13.50) | 7.60 (0.60–14.61) | ||
| TCC | 0.411 | −1.75 (−5.91–2.42) | 0.248 | −2.60 (−7.00–1.80) | |||
| TGC | 0.199 | 3.17 (− 1.66–8.01) | 0.124 | 4.00 (− 1.08–9.09) | |||
| TCT (ref) | – | – | – | – | |||
| LC13 Chest pain | ERCC2 | rs13181-rs3916874-rs238416 | GCC | 0.899 | 0.95 (0.45–2.03) | 0.712 | 1.18 (0.50–2.77) |
| TCC | 0.705 | 1.09 (0.69–1.74) | 0.736 | 1.10 (0.64–1.86) | |||
| TGC | 0.44 (0.22–0.87) | 0.42 (0.21–0.87) | |||||
| TCT (ref) | – | – | – | – | |||
| LC13 Pain in other parts | ERCC2 | rs13181-rs3916874-rs238416 | GCC | 0.367 | 0.66 (0.27–1.61) | 0.198 | 0.52 (0.19–1.41) |
| TCC | 1.59 (1.02–2.50) | 1.88 (1.14–3.12) | |||||
| TGC | 0.093 | 0.57 (0.29–1.10) | 0.145 | 0.58 (0.28–1.21) | |||
| TCT (ref) | – | – | – | – | |||
| LC13 Dysphagia | ERCC2 | rs13181-rs3916874-rs238416 | GCC | 0.491 | 0.49 (0.06–3.73) | 0.546 | 0.44 (0.03–6.32) |
| TCC | 0.062 | 2.10 (0.96–4.55) | 2.82 (1.01–7.85) | ||||
| TGC | 0.758 | 1.18 (0.42–3.33) | 0.451 | 0.60 (0.16–2.28) | |||
| TCT (ref) | – | – | – | – | |||
| SAS Anxiety state | ERCC2 | rs13181-rs3916874-rs238416 | GCC | 0.28 (0.10–0.80) | 0.23 (0.08–0.69) | ||
| TCC | 0.401 | 1.20 (0.79–1.81) | 0.479 | 1.18 (0.75–1.85) | |||
| TGC | 0.188 | 0.70 (0.41–1.19) | 0.211 | 0.69 (0.39–1.23) | |||
| TCT (ref) | – | – | – | – | |||
Covariates refer to environmental factors including:sex, age, occupation, marriage, education, number of children, smoking history, drinking history, medical insurance, pathological types, clinical stages, metastasis, concurrent symptoms, operation history, and chemotherapy
When calculating the frequency, the molecule = the corresponding haplotype number, the denominator of the reference haplotype = 2 * (the sample number that contains the reference haplotype), the denominator of none reference haplotype = 2 * (the sample number that contains the reference and the current haplotypes). * means multiplication
aβ and 95% confidence interval (CI) were reported (Linear regression was used for general health condition and functioning domains, anxiety and depression). bodds ratio (OR) and 95% CI were reported (Logistic regression was used for symptoms domains, anxiety and depression)