Literature DB >> 34280182

The effect of natural selection on the propagation of protein expression noise to bacterial growth.

Laurens H J Krah1, Rutger Hermsen1.   

Abstract

In bacterial cells, protein expression is a highly stochastic process. Gene expression noise moreover propagates through the cell and adds to fluctuations in the cellular growth rate. A common intuition is that, due to their relatively high noise amplitudes, proteins with a low mean expression level are the most important drivers of fluctuations in physiological variables. In this work, we challenge this intuition by considering the effect of natural selection on noise propagation. Mathematically, the contribution of each protein species to the noise in the growth rate depends on two factors: the noise amplitude of the protein's expression level, and the sensitivity of the growth rate to fluctuations in that protein's concentration. We argue that natural selection, while shaping mean abundances to increase the mean growth rate, also affects cellular sensitivities. In the limit in which cells grow optimally fast, the growth rate becomes most sensitive to fluctuations in highly abundant proteins. This causes abundant proteins to overall contribute strongly to the noise in the growth rate, despite their low noise levels. We further explore this result in an experimental data set of protein abundances, and test key assumptions in an evolving, stochastic toy model of cellular growth.

Entities:  

Year:  2021        PMID: 34280182     DOI: 10.1371/journal.pcbi.1009208

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  45 in total

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Journal:  J Mol Microbiol Biotechnol       Date:  2010-06-08

2.  Stochastic gene expression in fluctuating environments.

Authors:  Mukund Thattai; Alexander van Oudenaarden
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3.  Linking stochastic dynamics to population distribution: an analytical framework of gene expression.

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Review 4.  Why Do Fast-Growing Bacteria Enter Overflow Metabolism? Testing the Membrane Real Estate Hypothesis.

Authors:  Mariola Szenk; Ken A Dill; Adam M R de Graff
Journal:  Cell Syst       Date:  2017-07-26       Impact factor: 10.304

Review 5.  Mathematical modelling of microbes: metabolism, gene expression and growth.

Authors:  Hidde de Jong; Stefano Casagranda; Nils Giordano; Eugenio Cinquemani; Delphine Ropers; Johannes Geiselmann; Jean-Luc Gouzé
Journal:  J R Soc Interface       Date:  2017-11       Impact factor: 4.118

6.  Individuality and universality in the growth-division laws of single E. coli cells.

Authors:  Andrew S Kennard; Matteo Osella; Avelino Javer; Jacopo Grilli; Philippe Nghe; Sander J Tans; Pietro Cicuta; Marco Cosentino Lagomarsino
Journal:  Phys Rev E       Date:  2016-01-19       Impact factor: 2.529

7.  Optimality and sub-optimality in a bacterial growth law.

Authors:  Benjamin D Towbin; Yael Korem; Anat Bren; Shany Doron; Rotem Sorek; Uri Alon
Journal:  Nat Commun       Date:  2017-01-19       Impact factor: 14.919

8.  Empirical mean-noise fitness landscapes reveal the fitness impact of gene expression noise.

Authors:  Jörn M Schmiedel; Lucas B Carey; Ben Lehner
Journal:  Nat Commun       Date:  2019-07-18       Impact factor: 14.919

Review 9.  Connecting growth with gene expression: of noise and numbers.

Authors:  Vahid Shahrezaei; Samuel Marguerat
Journal:  Curr Opin Microbiol       Date:  2015-06-17       Impact factor: 7.934

Review 10.  Microbial metabolic noise.

Authors:  Andreas E Vasdekis; Abhyudai Singh
Journal:  WIREs Mech Dis       Date:  2020-11-23
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