Literature DB >> 26093364

Connecting growth with gene expression: of noise and numbers.

Vahid Shahrezaei1, Samuel Marguerat2.   

Abstract

Growth is a dynamic process whereby cells accumulate mass. Growth rates of single cells are connected to RNA and protein synthesis rates, and therefore with biomolecule numbers. Noise in gene expression depends on these numbers, and is thus linked with cellular growth. Whether these global attributes of the cell participate in gene regulation is still largely unexplored. New experimental and modelling studies suggest that systemic variations in biomolecule numbers can coordinate cellular processes, including growth itself, through global regulatory feedback that acts in addition to genetic regulatory networks. Here, we review these findings and speculate on possible implications of this less appreciated layer of gene regulation for cellular physiology and adaptation to changing environments.
Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2015        PMID: 26093364     DOI: 10.1016/j.mib.2015.05.012

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  24 in total

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Authors:  Sebastián Chávez; José García-Martínez; Lidia Delgado-Ramos; José E Pérez-Ortín
Journal:  Curr Genet       Date:  2016-03-23       Impact factor: 3.886

3.  Analysis of Noise Mechanisms in Cell-Size Control.

Authors:  Saurabh Modi; Cesar Augusto Vargas-Garcia; Khem Raj Ghusinga; Abhyudai Singh
Journal:  Biophys J       Date:  2017-06-06       Impact factor: 4.033

4.  A mechanism-aware and multiomic machine-learning pipeline characterizes yeast cell growth.

Authors:  Christopher Culley; Supreeta Vijayakumar; Guido Zampieri; Claudio Angione
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-16       Impact factor: 11.205

5.  The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons.

Authors:  José García-Martínez; Lidia Delgado-Ramos; Guillermo Ayala; Vicent Pelechano; Daniel A Medina; Fany Carrasco; Ramón González; Eduardo Andrés-León; Lars Steinmetz; Jonas Warringer; Sebastián Chávez; José E Pérez-Ortín
Journal:  Nucleic Acids Res       Date:  2015-12-29       Impact factor: 16.971

6.  Few regulatory metabolites coordinate expression of central metabolic genes in Escherichia coli.

Authors:  Karl Kochanowski; Luca Gerosa; Simon F Brunner; Dimitris Christodoulou; Yaroslav V Nikolaev; Uwe Sauer
Journal:  Mol Syst Biol       Date:  2017-01-03       Impact factor: 11.429

7.  Mycobacteria Modify Their Cell Size Control under Sub-Optimal Carbon Sources.

Authors:  Miles Priestman; Philipp Thomas; Brian D Robertson; Vahid Shahrezaei
Journal:  Front Cell Dev Biol       Date:  2017-07-12

8.  How Cells Can Control Their Size by Pumping Ions.

Authors:  Alan R Kay
Journal:  Front Cell Dev Biol       Date:  2017-05-08

9.  Effects of growth rate and promoter activity on single-cell protein expression.

Authors:  Niclas Nordholt; Johan van Heerden; Remco Kort; Frank J Bruggeman
Journal:  Sci Rep       Date:  2017-07-24       Impact factor: 4.379

10.  Division rate, cell size and proteome allocation: impact on gene expression noise and implications for the dynamics of genetic circuits.

Authors:  François Bertaux; Samuel Marguerat; Vahid Shahrezaei
Journal:  R Soc Open Sci       Date:  2018-03-21       Impact factor: 2.963

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