| Literature DB >> 34276114 |
Yu-Dong Zhang1, Zheng Zhang2,3, Xin Zhang4, Shui-Hua Wang5.
Abstract
BACKGROUND: COVID-19 has caused 3.34m deaths till 13/May/2021. It is now still causing confirmed cases and ongoing deaths every day.Entities:
Keywords: Automatic differentiation; COVID-19; Chest CT; Chest X-ray; Convolutional neural network; Data harmonization; Deep learning; Multimodality; Multiple input
Year: 2021 PMID: 34276114 PMCID: PMC8277963 DOI: 10.1016/j.patrec.2021.06.021
Source DB: PubMed Journal: Pattern Recognit Lett ISSN: 0167-8655 Impact factor: 3.756
Fig. 1Top 10 countries in terms of cumulative deaths (13/May/2021).
Data harmonization.
| Input | CCT image |
| Step 1 | For CCT image |
| Step 2 | For CXR image |
| Step 3 | CCT images are resized to |
| Output | CCT image |
Fig. 2Flowchart of preprocessing.
Fig. 3Pre-processed images of one COVID-19 patient.
Abbreviation list.
| Meanings | Abbreviations |
|---|---|
| AM | activation map |
| AI | artificial intelligence |
| AP | average pooling |
| BN | batch normalization |
| CAM | channel attention module |
| CCT | chest computed tomography |
| CXR | chest X-ray |
| CB | convolutional block |
| CBAM | convolutional block attention module |
| CNN | convolutional neural network |
| DA | data augmentation |
| DL | deep learning |
| FMI | Fowlkes–Mallows index |
| MCC | Matthews correlation coefficient |
| MP | max pooling |
| MSD | mean and standard deviation |
| ReLU | rectified linear unit |
| SAPN | salt-and-pepper noise |
| SAM | spatial attention module |
| SN | speckle noise |
| SE | squeeze-and-excitation |
Fig. 4Structural comparison.
Fig. 5Flowchart of two modules.
Fig. 6Variables and sizes of AMs of three proposed models.
Details of proposed MIDCAN model.
| Name | Kernel Parameter | Variable and size |
|---|---|---|
| Input-CCT | ||
| 3D-CBAM-1 | [3 × 3 × 3, 16]x3, [/2/2/2] | |
| 3D-CBAM-2 | [3 × 3 × 3, 32]x2, [/2/2/1] | |
| 3D-CBAM-3 | [3 × 3 × 3, 32]x2, [/2/2/2] | |
| 3D-CBAM-4 | [3 × 3 × 3, 64]x2, [/2/2/1] | |
| 3D-CBAM-5 | [3 × 3 × 3, 64]x2, [/2/2/2] | |
| Flatten | ||
| Input-CXR | ||
| CBAM-1 | [3 × 3, 16]x3, [/2/2] | |
| CBAM-2 | [3 × 3, 32]x2, [/2/2] | |
| CBAM-3 | [3 × 3, 64]x2, [/2/2] | |
| CBAM-4 | [3 × 3, 64]x2, [/2/2] | |
| CBAM-5 | [3 × 3, 128]x2, [/2/2] | |
| Flatten | ||
| Concatenate | ||
| FCL-1 | 500 × 16384, 500 × 1 | |
| FCL-2 | 2 × 500, 2 × 1 | |
| Softmax |
Fig. 7Examples of newly proposed DA methods.
Fig. 8Diagram of one run of -fold cross validation.
Parameter setting.
| Parameter | Value |
|---|---|
| (0, 255) | |
| 5 | |
| 5 | |
| 0.05 | |
| 0 | |
| 0.05 | |
| 9 | |
| 30 | |
| 90 | |
| 10 | |
| 10 |
Statistical results of proposed MIDCAN model.
| Run | |||||||
|---|---|---|---|---|---|---|---|
| 1 | 97.62 | 100.00 | 100.00 | 98.84 | 98.80 | 97.70 | 98.80 |
| 2 | 97.62 | 97.73 | 97.62 | 97.67 | 97.62 | 95.35 | 97.62 |
| 3 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
| 4 | 100.00 | 97.73 | 97.67 | 98.84 | 98.82 | 97.70 | 98.83 |
| 5 | 95.24 | 97.73 | 97.56 | 96.51 | 96.39 | 93.04 | 96.39 |
| 6 | 100.00 | 93.18 | 93.33 | 96.51 | 96.55 | 93.26 | 96.61 |
| 7 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
| 8 | 97.62 | 95.45 | 95.35 | 96.51 | 96.47 | 93.05 | 96.48 |
| 9 | 95.24 | 100.00 | 100.00 | 97.67 | 97.56 | 95.44 | 97.59 |
| 10 | 97.62 | 97.73 | 97.62 | 97.67 | 97.62 | 95.35 | 97.62 |
| MSD | 98.10 | 97.95 | 97.92 | 98.02 | 97.98 | 96.09 | 97.99 |
Comparison of different settings.
| Method | |||||||
|---|---|---|---|---|---|---|---|
| MIDCAN | 98.10 | 97.95 | 97.92 | 98.02 | 97.98 | 96.09 | 97.99 |
| SIDCAN | 96.19 | 95.91 | 95.76 | 96.05 | 95.96 | 92.11 | 95.97 |
| SIDCAN-CXR | 93.81 | 93.86 | 93.70 | 93.84 | 93.69 | 87.78 | 93.72 |
| MIDCAN | 94.29 | 94.32 | 94.10 | 94.30 | 94.17 | 88.65 | 94.18 |
| SIDCAN-CCT(NA) | 92.86 | 93.64 | 93.36 | 93.26 | 93.08 | 86.55 | 93.10 |
| SIDCAN-CXR(NA) | 89.52 | 90.68 | 90.29 | 90.12 | 89.85 | 80.31 | 89.88 |
Fig. 9Error bar comparison of six different settings.
Fig. 10ROC curves of six settings.
Fig. 11Manual delineation and heatmap results of one patient.
Fig. 123D bar plot of approach comparison.
Comparison with SOTA approaches (Unit: %).
| Approach | |||||||
|---|---|---|---|---|---|---|---|
| GLCM | 71.90 | 78.18 | 76.04 | 75.12 | 73.80 | 50.35 | 73.89 |
| WE-BBO | 74.05 | 74.77 | 73.83 | 74.42 | 73.81 | 48.98 | 73.88 |
| WRE | 86.43 | 86.36 | 86.01 | 86.40 | 86.12 | 72.95 | 86.17 |
| FSVC | 91.90 | 90.00 | 89.85 | 90.93 | 90.82 | 81.97 | 90.85 |
| OTLS | 95.95 | 96.59 | 96.45 | 96.28 | 96.17 | 92.60 | 96.19 |
| MRA | 86.43 | 90.45 | 89.71 | 88.49 | 87.98 | 77.09 | 88.02 |
| GG | 93.33 | 90.00 | 90.13 | 91.63 | 91.61 | 83.49 | 91.67 |
| SMO | 93.10 | 95.23 | 94.99 | 94.19 | 93.99 | 88.45 | 94.02 |
| MIDCAN (Ours) | 98.10 | 97.95 | 97.92 | 98.02 | 97.98 | 96.09 | 97.99 |