| Literature DB >> 34272765 |
Shunwei Huang1,2, Tingyu Zhang1,2, Yuhua Wang1,2, Linlin Wang1,2, Ziye Yan1,2, Ying Teng1,2, Zhen Li1,2, Qiuyue Lou1,2, Shuang Liu3, Jing Cai3, Yangfan Chen3, Mu Li3, Hailiang Huang4, Zhouzhou Xu5, Yanfeng Zou1,2.
Abstract
BACKGROUND: Systemic lupus erythematosus is a heterogeneous autoimmune disease characterized by multi-system injuries and overproduction of autoantibodies. There are many genetic studies on SLE, but no report has considered the relationship between cytoplasmic dynein and SLE susceptibility.Entities:
Keywords: copy number variation; glucocorticoids; single nucleotide polymorphism; systemic lupus erythematosus
Mesh:
Substances:
Year: 2021 PMID: 34272765 PMCID: PMC8373356 DOI: 10.1002/jcla.23892
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 2.352
Comparison of different alleles of DYNC1H1 gene in patients and controls
| Allele |
Patients (N=502) [n(%)] |
Controls (N=544) [n(%)] |
| |||
|---|---|---|---|---|---|---|
| rs1004903 | 4.255 | 1.234 (1.010–1.507) |
| 0.091 | ||
| G | 739 (73.61) | 843 (77.48) | ||||
| A | 265 (26.39) | 245 (22.52) | ||||
| rs11160668 | 1.091 | 0.898 (0.733–1.099) | 0.296 | 0.414 | ||
| G | 778 (77.49) | 822 (75.55) | ||||
| A | 226 (22.51) | 266 (24.45) | ||||
| rs1190605 | 3.611 | 1.201 (0.994–1.450) | 0.057 | 0.100 | ||
| G | 692 (68.92) | 791 (72.70) | ||||
| C | 312 (31.08) | 297 (27.30) | ||||
| rs1190606 | 12.006 | 1.374 (1.148–1.644) |
|
| ||
| A | 611 (60.86) | 741 (68.11) | ||||
| G | 393 (39.14) | 347 (31.89) | ||||
| rs12161908 | 0.114 | 1.068 (0.729–1.565) | 0.736 | 0.859 | ||
| G | 949 (94.52) | 1032 (94.85) | ||||
| C | 55 (5.48) | 56 (5.15) | ||||
| rs2273440 | 4.290 | 1.233 (1.011–1.503) |
| 0.091 | ||
| G | 733 (73.01) | 837 (76.93) | ||||
| A | 271 (26.99) | 251 (23.07) | ||||
| rs3818188 | 0.016 | 0.989 (0.833–1.174) | 0.899 | 0.899 | ||
| G | 526 (52.39) | 567 (52.11) | ||||
| A | 478 (47.61) | 521 (47.89) |
Abbreviations: BH, Benjamini‐Hochberg method based on the false discovery rate;CI, confidence interval; OR, odds ratio.
FIGURE 1The association between rs1190606 of DYNC1H1 gene and SLE susceptibility: A, Allele distribution of rs1190606 between case and control groups; B, Genotype frequency of rs1190606 in dominant model between case and control groups
Association between DYNC1H1 polymorphisms and susceptibility of SLE
| Polymorphisms | Dominant model | Recessive model | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
|
Crude |
Crude |
Adjusted* |
Adjusted |
|
Crude |
Crude |
Adjusted* |
Adjusted |
| |
| rs1004903 | 1.243 (0.971–1.589) | 0.084 | 1.248 (0.975–1.596) | 0.078 | 0.208 | 1.472 (0.908–2.386) | 0.117 | 1.473 (0.908–2.389) | 0.116 | 0.203 |
| rs11160668 | 0.921 (0.720–1.178) | 0.510 | 0.926 (0.724–1.186) | 0.543 | 0.760 | 0.688 (0.396–1.192) | 0.182 | 0.695 (0.400–1.207) | 0.196 | 0.274 |
| rs1190605 | 1.201 (0.942–1.531) | 0.139 | 1.206 (0.945–1.538) | 0.132 | 0.231 | 1.473 (0.948–2.288) | 0.085 | 1.469 (0.945–2.283) | 0.087 | 0.203 |
| rs1190606 | 1.544 (1.204–1.979) | 6.09×10−4 | 1.547 (1.207–1.984) |
|
| 1.465 (1.006–2.131) | 0.046 | 1.469 (1.009–2.139) |
| 0.203 |
| rs12161908 | 1.027 (0.689–1.533) | 0.895 | 1.023 (0.685–1.526) | 0.912 | 0.960 | 3.265 (0.338–31.486) | 0.306 | 3.223 (0.333–31.201) | 0.312 | 0.364 |
| rs2273440 | 1.234 (0.965–1.578) | 0.094 | 1.238 (0.968–1.583) | 0.089 | 0.208 | 1.477 (0.930–2.347) | 0.099 | 1.476 (0.929–2.346) | 0.100 | 0.203 |
| rs3818188 | 1.014 (0.773–1.331) | 0.918 | 1.007 (0.767–1.322) | 0.960 | 0.960 | 0.954 (0.715–1.273) | 0.748 | 0.945 (0.707–1.262) | 0.701 | 0.701 |
Association between haplotypes of DYNC1H1 and susceptibility of SLE (female)
| Haplotypes | Cases (frequencies) | Controls (frequencies) | Fisher's | Pearson's |
| ||
|---|---|---|---|---|---|---|---|
| A G C G G A G | 204.27 (0.226) | 193.47 (0.201) | 2.352 | 0.125 | 0.125 | 1.191 (0.952–1.489) | 0.250 |
| G A G A G G G | 142.96 (0.158) | 203.68 (0.212) | 7.848 | 0.005 |
| 0.712 (0.562–0.904) |
|
| G A G G G G G | 33.82 (0.037) | 12.73 (0.013) | 11.662 | 0.001 |
| 2.959 (1.542–5.676) |
|
| G G C A C G G | 42.12 (0.047) | 44.97 (0.047) | 0.005 | 0.942 | 0.942 | 1.016 (0.660–1.564) | 0.942 |
| G G G A G G A | 339.31 (0.375) | 385.64 (0.401) | 0.680 | 0.410 | 0.410 | 0.923 (0.763–1.116) | 0.492 |
| G G G G G G A | 81.50 (0.090) | 74.62 (0.078) | 1.225 | 0.268 | 0.268 | 1.204 (0.866–1.673) | 0.402 |
frequency <0.03 in both control and case has been dropped.
Abbreviations: BH, Benjamini‐Hochberg method based on the false discovery rate;CI, confidence interval; OR, odds ratio.
Association between DYNC1H1 polymorphisms and GCs efficacy in followed up patients
| Polymorphisms | Dominant model | Recessive model | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Crude |
Crude |
Adjusted* |
Adjusted |
| Crude |
Crude |
Adjusted* |
Adjusted |
| |
| rs1004903 | 1.024 (0.704–1.491) | 0.900 | 0.997 (0.680–1.464) | 0.989 | 0.991 | 0.686 (0.341–1.378) | 0.289 | 0.677 (0.332–1.381) | 0.283 | 0.733 |
| rs11160668 | 0.973 (0.665–1.424) | 0.890 | 0.949 (0.643–1.400) | 0.793 | 0.991 | 0.615 (0.230–1.649) | 0.334 | 0.673 (0.246–1.842) | 0.441 | 0.733 |
| rs1190605 | 1.003 (0.691–1.457) | 0.986 | 0.976 (0.666–1.432) | 0.902 | 0.991 | 0.914 (0.494–1.690) | 0.774 | 0.896 (0.478–1.680) | 0.733 | 0.733 |
| rs1190606 | 0.992 (0.674–1.459) | 0.966 | 0.969 (0.653–1.438) | 0.877 | 0.991 | 1.067 (0.626–1.819) | 0.811 | 1.114 (0.643–1.928) | 0.701 | 0.733 |
| rs12161908 | 0.993 (0.532–1.851) | 0.982 | 1.004 (0.532–1.894) | 0.991 | 0.991 | 2.737 (0.246–30.403) | 0.412 | 2.852 (0.252–32.229) | 0.397 | 0.733 |
| rs3818188 | 1.175 (0.767–1.800) | 0.458 | 1.144 (0.740–1.768) | 0.546 | 0.991 | 1.033 (0.667–1.601) | 0.884 | 1.119 (0.712–1.760) | 0.625 | 0.733 |
FIGURE 2Copy number variation of DYNC1H1 gene between case and control groups