Literature DB >> 3427197

Configurational entropy of native proteins.

M Karplus1, T Ichiye, B M Pettitt.   

Abstract

Simulations of the residual configurational entropy of a protein in the native state suggest that it is nearly an order of magnitude larger than the entropy of denaturation. The implications of this result are discussed.

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Year:  1987        PMID： 3427197      PMCID： PMC1330109          DOI： 10.1016/S0006-3495(87)83303-9

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


  10 in total

1.  Heat capacity and entropy changes in processes involving proteins.

Authors:  J M Sturtevant
Journal:  Proc Natl Acad Sci U S A       Date:  1977-06       Impact factor: 11.205

2.  Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme.

Authors:  M Levitt; C Sander; P S Stern
Journal:  J Mol Biol       Date:  1985-02-05       Impact factor: 5.469

3.  Mutant forms of staphylococcal nuclease with altered patterns of guanidine hydrochloride and urea denaturation.

Authors:  D Shortle; A K Meeker
Journal:  Proteins       Date:  1986-09

4.  Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin.

Authors:  R Elber; M Karplus
Journal:  Science       Date:  1987-01-16       Impact factor: 47.728

Review 5.  Dynamics of proteins: elements and function.

Authors:  M Karplus; J A McCammon
Journal:  Annu Rev Biochem       Date:  1983       Impact factor: 23.643

6.  Thermodynamic stability and point mutations of bacteriophage T4 lysozyme.

Authors:  R Hawkes; M G Grutter; J Schellman
Journal:  J Mol Biol       Date:  1984-05-15       Impact factor: 5.469

7.  Inelastic neutron scattering analysis of hexokinase dynamics and its modification on binding of glucose.

Authors:  B Jacrot; S Cusack; A J Dianoux; D M Engelman
Journal:  Nature       Date:  1982-11-04       Impact factor: 49.962

Review 8.  Stability of proteins: small globular proteins.

Authors:  P L Privalov
Journal:  Adv Protein Chem       Date:  1979

9.  Time dependence of atomic fluctuations in proteins: analysis of local and collective motions in bovine pancreatic trypsin inhibitor.

Authors:  S Swaminathan; T Ichiye; W van Gunsteren; M Karplus
Journal:  Biochemistry       Date:  1982-10-12       Impact factor: 3.162

10.  Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor.

Authors:  B Brooks; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  1983-11       Impact factor: 11.205
  10 in total
  62 in total

1.  A measure of conformational entropy change during thermal protein unfolding using neutron spectroscopy.

Authors:  Jörg Fitter
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

2.  Analysis of deuterium relaxation-derived methyl axis order parameters and correlation with local structure.

Authors:  A Mittermaier; L E Kay; J D Forman-Kay
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

3.  Resolution and Characterization of Chemical Steps in Enzyme Catalytic Sequences by Using Low-Temperature and Time-Resolved, Full-Spectrum EPR Spectroscopy in Fluid Cryosolvent and Frozen Solution Systems.

Authors:  Miao Wang; Chen Zhu; Meghan Kohne; Kurt Warncke
Journal:  Methods Enzymol       Date:  2015-09-14       Impact factor: 1.600

4.  Entropic origin of cobalt-carbon bond cleavage catalysis in adenosylcobalamin-dependent ethanolamine ammonia-lyase.

Authors:  Miao Wang; Kurt Warncke
Journal:  J Am Chem Soc       Date:  2013-10-01       Impact factor: 15.419

5.  Induced fit and the entropy of structural adaptation in the complexation of CAP and lambda-repressor with cognate DNA sequences.

Authors:  Surjit B Dixit; David Q Andrews; D L Beveridge
Journal:  Biophys J       Date:  2005-02-24       Impact factor: 4.033

6.  Ligand configurational entropy and protein binding.

Authors:  Chia-en A Chang; Wei Chen; Michael K Gilson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-22       Impact factor: 11.205

7.  Conformational entropy in molecular recognition by proteins.

Authors:  Kendra King Frederick; Michael S Marlow; Kathleen G Valentine; A Joshua Wand
Journal:  Nature       Date:  2007-07-19       Impact factor: 49.962

Review 8.  Challenges in the computational design of proteins.

Authors:  María Suárez; Alfonso Jaramillo
Journal:  J R Soc Interface       Date:  2009-03-11       Impact factor: 4.118

9.  Characterization of molten globule PopB in absence and presence of its chaperone PcrH.

Authors:  Supratim Dey; Abhishek Basu; Saumen Datta
Journal:  Protein J       Date:  2012-06       Impact factor: 2.371

Review 10.  The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation.

Authors:  A Joshua Wand
Journal:  Curr Opin Struct Biol       Date:  2012-12-13       Impact factor: 6.809
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