Literature DB >> 34271681

Effective diffusivity of a Brownian particle in a two-dimensional periodic channel of abruptly alternating width.

Leonardo Dagdug1, Alexander M Berezhkovskii2, Vladimir Yu Zitserman3, Sergey M Bezrukov4.   

Abstract

We study diffusion of a Brownian particle in a two-dimensional periodic channel of abruptly alternating width. Our main result is a simple approximate analytical expression for the particle effective diffusivity, which shows how the diffusivity depends on the geometric parameters of the channel: lengths and widths of its wide and narrow segments. The result is obtained in two steps: first, we introduce an approximate one-dimensional description of particle diffusion in the channel, and second, we use this description to derive the expression for the effective diffusivity. While the reduction to the effective one-dimensional description is standard for systems of smoothly varying geometry, such a reduction in the case of abruptly changing geometry requires a new methodology used here, which is based on the boundary homogenization approach to the trapping problem. To test the accuracy of our analytical expression and thus establish the range of its applicability, we compare analytical predictions with the results obtained from Brownian dynamics simulations. The comparison shows excellent agreement between the two, on condition that the length of the wide segment of the channel is equal to or larger than its width.

Entities:  

Year:  2021        PMID: 34271681      PMCID: PMC9006170          DOI: 10.1103/PhysRevE.103.062106

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  24 in total

1.  Diffusion in a two-dimensional channel with curved midline and varying width: reduction to an effective one-dimensional description.

Authors:  R Mark Bradley
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-12-31

2.  Corrections to the Fick-Jacobs equation.

Authors:  P Kalinay; J K Percus
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-10-05

3.  One-dimensional description of diffusion in a tube of abruptly changing diameter: Boundary homogenization based approach.

Authors:  Alexander M Berezhkovskii; Alexander V Barzykin; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2009-12-14       Impact factor: 3.488

4.  Non-steady-state diffusion in two-dimensional periodic channels.

Authors:  Matan Sivan; Oded Farago
Journal:  Phys Rev E       Date:  2019-02       Impact factor: 2.529

5.  Dispersion in two-dimensional periodic channels with discontinuous profiles.

Authors:  M Mangeat; T Guérin; D S Dean
Journal:  J Chem Phys       Date:  2018-09-28       Impact factor: 3.488

6.  Synthetic biology. Programmable on-chip DNA compartments as artificial cells.

Authors:  Eyal Karzbrun; Alexandra M Tayar; Vincent Noireaux; Roy H Bar-Ziv
Journal:  Science       Date:  2014-08-15       Impact factor: 47.728

7.  Designing Biomimic Two-Dimensional Ionic Transport Channels for Efficient Ion Sieving.

Authors:  Mengchen Zhang; Pengxiang Zhao; Peishan Li; Yufan Ji; Gongping Liu; Wanqin Jin
Journal:  ACS Nano       Date:  2021-02-23       Impact factor: 15.881

8.  Brain Extracellular Space as a Diffusion Barrier.

Authors:  Charles Nicholson; Padideh Kamali-Zare; Lian Tao
Journal:  Comput Vis Sci       Date:  2011-10-01

9.  Trapping of particles diffusing in two dimensions by a hidden binding site.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Vladimir Yu Zitserman; Sergey M Bezrukov
Journal:  Phys Rev E       Date:  2021-01       Impact factor: 2.529

10.  Scale-dependent diffusion anisotropy in nanoporous silicon.

Authors:  Daria Kondrashova; Alexander Lauerer; Dirk Mehlhorn; Hervé Jobic; Armin Feldhoff; Matthias Thommes; Dipanjan Chakraborty; Cedric Gommes; Jovana Zecevic; Petra de Jongh; Armin Bunde; Jörg Kärger; Rustem Valiullin
Journal:  Sci Rep       Date:  2017-01-20       Impact factor: 4.379

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