Literature DB >> 34271009

Arginine Modulates Carbapenem Deactivation by OXA-24/40 in Acinetobacter baumannii.

Jamie VanPelt1, Shannon Stoffel1, Michael W Staude1, Kayla Dempster1, Heath A Rose1, Sarah Graney1, Erin Graney1, Sara Braynard1, Elizaveta Kovrigina1, David A Leonard2, Jeffrey W Peng3.   

Abstract

The resistance of Gram-negative bacteria to β-lactam antibiotics stems mainly from β-lactamase proteins that hydrolytically deactivate the β-lactams. Of particular concern are the β-lactamases that can deactivate a class of β-lactams known as carbapenems. Carbapenems are among the few anti-infectives that can treat multi-drug resistant bacterial infections. Revealing the mechanisms of their deactivation by β-lactamases is a necessary step for preserving their therapeutic value. Here, we present NMR investigations of OXA-24/40, a carbapenem-hydrolyzing Class D β-lactamase (CHDL) expressed in the gram-negative pathogen, Acinetobacter baumannii. Using rapid data acquisition methods, we were able to study the "real-time" deactivation of the carbapenem known as doripenem by OXA-24/40. Our results indicate that OXA-24/40 has two deactivation mechanisms: canonical hydrolytic cleavage, and a distinct mechanism that produces a β-lactone product that has weak affinity for the OXA-24/40 active site. The mechanisms issue from distinct active site environments poised either for hydrolysis or β-lactone formation. Mutagenesis reveals that R261, a conserved active site arginine, stabilizes the active site environment enabling β-lactone formation. Our results have implications not only for OXA-24/40, but the larger family of CHDLs now challenging clinical settings on a global scale.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CHDL; allostery; carbapenem; protein dynamics; real-time

Mesh:

Substances:

Year:  2021        PMID: 34271009      PMCID: PMC8453075          DOI: 10.1016/j.jmb.2021.167150

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   6.151


  37 in total

1.  Correlation of the effect of beta-lactamase inhibitors on the beta-lactamase in growing cultures of gram-negative bacteria with their effect on the isolated beta-lactamase.

Authors:  C J Easton; J R Knowles
Journal:  Antimicrob Agents Chemother       Date:  1984-09       Impact factor: 5.191

2.  Altered flexibility in the substrate-binding site of related native and engineered high-alkaline Bacillus subtilisins.

Authors:  F A Mulder; D Schipper; R Bott; R Boelens
Journal:  J Mol Biol       Date:  1999-09-10       Impact factor: 5.469

3.  Heteronuclear three-dimensional NMR spectroscopy of the inflammatory protein C5a.

Authors:  E R Zuiderweg; S W Fesik
Journal:  Biochemistry       Date:  1989-03-21       Impact factor: 3.162

4.  Cation-pi interactions in structural biology.

Authors:  J P Gallivan; D A Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

5.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

6.  Expanded Substrate Activity of OXA-24/40 in Carbapenem-Resistant Acinetobacter baumannii Involves Enhanced Binding Loop Flexibility.

Authors:  Michael W Staude; David A Leonard; Jeffrey W Peng
Journal:  Biochemistry       Date:  2016-11-11       Impact factor: 3.162

7.  Structural basis of activity against aztreonam and extended spectrum cephalosporins for two carbapenem-hydrolyzing class D β-lactamases from Acinetobacter baumannii.

Authors:  Joshua M Mitchell; Jozlyn R Clasman; Cynthia M June; Kip-Chumba J Kaitany; James R LaFleur; Magdalena A Taracila; Neil V Klinger; Robert A Bonomo; Troy Wymore; Agnieszka Szarecka; Rachel A Powers; David A Leonard
Journal:  Biochemistry       Date:  2015-03-02       Impact factor: 3.162

8.  Structures of the class D Carbapenemases OXA-23 and OXA-146: mechanistic basis of activity against carbapenems, extended-spectrum cephalosporins, and aztreonam.

Authors:  Kip-Chumba J Kaitany; Neil V Klinger; Cynthia M June; Maddison E Ramey; Robert A Bonomo; Rachel A Powers; David A Leonard
Journal:  Antimicrob Agents Chemother       Date:  2013-07-22       Impact factor: 5.191

9.  Structural origins of oxacillinase specificity in class D β-lactamases.

Authors:  Cynthia M June; Beth C Vallier; Robert A Bonomo; David A Leonard; Rachel A Powers
Journal:  Antimicrob Agents Chemother       Date:  2013-10-28       Impact factor: 5.191

10.  TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins.

Authors:  M Salzmann; K Pervushin; G Wider; H Senn; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.