Literature DB >> 34259870

Determining a minimum set of variables for machine learning cardiovascular event prediction: results from REFINE SPECT registry.

Richard Rios1, Robert J H Miller1,2, Lien Hsin Hu3, Yuka Otaki1, Ananya Singh1, Marcio Diniz1, Tali Sharir4,5, Andrew J Einstein6,7, Mathews B Fish8, Terrence D Ruddy9, Philipp A Kaufmann10, Albert J Sinusas11, Edward J Miller11, Timothy M Bateman12, Sharmila Dorbala13, Marcelo DiCarli13, Serge Van Kriekinge1, Paul Kavanagh1, Tejas Parekh1, Joanna X Liang1, Damini Dey1, Daniel S Berman1, Piotr Slomka1.   

Abstract

AIMS: Optimal risk stratification with machine learning (ML) from myocardial perfusion imaging (MPI) includes both clinical and imaging data. While most imaging variables can be derived automatically, clinical variables require manual collection, which is time-consuming and prone to error. We determined the fewest manually input and imaging variables required to maintain the prognostic accuracy for major adverse cardiac events (MACE) in patients undergoing a single-photon emission computed tomography (SPECT) MPI. METHODS AND
RESULTS: This study included 20 414 patients from the multicentre REFINE SPECT registry and 2984 from the University of Calgary for training and external testing of the ML models, respectively. ML models were trained using all variables (ML-All) and all image-derived variables (including age and sex, ML-Image). Next, ML models were sequentially trained by incrementally adding manually input and imaging variables to baseline ML models based on their importance ranking. The fewest variables were determined as the ML models (ML-Reduced, ML-Minimum, and ML-Image-Reduced) that achieved comparable prognostic performance to ML-All and ML-Image. Prognostic accuracy of the ML models was compared with visual diagnosis, stress total perfusion deficit (TPD), and traditional multivariable models using area under the receiver-operating characteristic curve (AUC). ML-Minimum (AUC 0.798) obtained comparable prognostic accuracy to ML-All (AUC 0.799, P = 0.19) by including 12 of 40 manually input variables and 11 of 58 imaging variables. ML-Reduced achieved comparable accuracy (AUC 0.796) with a reduced set of manually input variables and all imaging variables. In external validation, the ML models also obtained comparable or higher prognostic accuracy than traditional multivariable models.
CONCLUSION: Reduced ML models, including a minimum set of manually collected or imaging variables, achieved slightly lower accuracy compared to a full ML model but outperformed standard interpretation methods and risk models. ML models with fewer collected variables may be more practical for clinical implementation. Published on behalf of the European Society of Cardiology. All rights reserved.
© The Author(s) 2021. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Dimensionality reduction; Machine learning; Major adverse cardiovascular events; Prognosis; SPECT myocardial perfusion imaging

Mesh:

Year:  2022        PMID: 34259870      PMCID: PMC9302886          DOI: 10.1093/cvr/cvab236

Source DB:  PubMed          Journal:  Cardiovasc Res        ISSN: 0008-6363            Impact factor:   13.081


  17 in total

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5.  2012 ACCF/AHA/ACP/AATS/PCNA/SCAI/STS Guideline for the diagnosis and management of patients with stable ischemic heart disease: a report of the American College of Cardiology Foundation/American Heart Association Task Force on Practice Guidelines, and the American College of Physicians, American Association for Thoracic Surgery, Preventive Cardiovascular Nurses Association, Society for Cardiovascular Angiography and Interventions, and Society of Thoracic Surgeons.

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8.  Rationale and design of the REgistry of Fast Myocardial Perfusion Imaging with NExt generation SPECT (REFINE SPECT).

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9.  Prognostically safe stress-only single-photon emission computed tomography myocardial perfusion imaging guided by machine learning: report from REFINE SPECT.

Authors:  Lien-Hsin Hu; Robert J H Miller; Tali Sharir; Frederic Commandeur; Richard Rios; Andrew J Einstein; Mathews B Fish; Terrence D Ruddy; Philipp A Kaufmann; Albert J Sinusas; Edward J Miller; Timothy M Bateman; Sharmila Dorbala; Marcelo Di Carli; Joanna X Liang; Evann Eisenberg; Damini Dey; Daniel S Berman; Piotr J Slomka
Journal:  Eur Heart J Cardiovasc Imaging       Date:  2021-05-10       Impact factor: 6.875

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  1 in total

1.  Handling missing values in machine learning to predict patient-specific risk of adverse cardiac events: Insights from REFINE SPECT registry.

Authors:  Richard Rios; Robert J H Miller; Nipun Manral; Tali Sharir; Andrew J Einstein; Mathews B Fish; Terrence D Ruddy; Philipp A Kaufmann; Albert J Sinusas; Edward J Miller; Timothy M Bateman; Sharmila Dorbala; Marcelo Di Carli; Serge D Van Kriekinge; Paul B Kavanagh; Tejas Parekh; Joanna X Liang; Damini Dey; Daniel S Berman; Piotr J Slomka
Journal:  Comput Biol Med       Date:  2022-03-25       Impact factor: 6.698

  1 in total

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