Literature DB >> 34256335

The evolving complexity of DNA damage foci: RNA, condensates and chromatin in DNA double-strand break repair.

Carel Fijen1, Eli Rothenberg2.   

Abstract

Formation of biomolecular condensates is increasingly recognized as a mechanism employed by cells to deal with stress and to optimize enzymatic reactions. Recent studies have characterized several DNA repair foci as phase-separated condensates, behaving like liquid droplets. Concomitantly, the apparent importance of long non-coding RNAs and RNA-binding proteins for the repair of double-strand breaks has raised many questions about their exact contribution to the repair process. Here we discuss how RNA molecules can participate in condensate formation and how RNA-binding proteins can act as molecular scaffolds. We furthermore summarize our current knowledge about how properties of condensates can influence the choice of repair pathway (homologous recombination or non-homologous end joining) and identify the open questions in this field of emerging importance.
Copyright © 2021 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Biomolecular condensates; DNA damage foci; Double-strand break repair; LLPS; lncRNA

Mesh:

Substances:

Year:  2021        PMID: 34256335      PMCID: PMC8364513          DOI: 10.1016/j.dnarep.2021.103170

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  153 in total

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Authors:  Huaxia Luo; Yu Sun; Guifeng Wei; Jianjun Luo; Xinling Yang; Wei Liu; Mingzhou Guo; Runsheng Chen
Journal:  Biochemistry       Date:  2015-04-28       Impact factor: 3.162

2.  Long non-coding RNA NEAT1 targeting impairs the DNA repair machinery and triggers anti-tumor activity in multiple myeloma.

Authors:  Elisa Taiana; Vanessa Favasuli; Domenica Ronchetti; Katia Todoerti; Francesca Pelizzoni; Martina Manzoni; Marzia Barbieri; Sonia Fabris; Ilaria Silvestris; Maria Eugenia Gallo Cantafio; Natalia Platonova; Valeria Zuccalà; Lorenza Maltese; Debora Soncini; Samantha Ruberti; Michele Cea; Raffaella Chiaramonte; Nicola Amodio; Pierfrancesco Tassone; Luca Agnelli; Antonino Neri
Journal:  Leukemia       Date:  2019-08-19       Impact factor: 11.528

Review 3.  The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway.

Authors:  Michael R Lieber
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

4.  gamma-H2AX dephosphorylation by protein phosphatase 2A facilitates DNA double-strand break repair.

Authors:  Dipanjan Chowdhury; Michael-Christopher Keogh; Haruhiko Ishii; Craig L Peterson; Stephen Buratowski; Judy Lieberman
Journal:  Mol Cell       Date:  2005-11-28       Impact factor: 17.970

5.  p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity.

Authors:  Carmen Adriaens; Laura Standaert; Jasmine Barra; Mathilde Latil; Annelien Verfaillie; Peter Kalev; Bram Boeckx; Paul W G Wijnhoven; Enrico Radaelli; William Vermi; Eleonora Leucci; Gaëlle Lapouge; Benjamin Beck; Joost van den Oord; Shinichi Nakagawa; Tetsuro Hirose; Anna A Sablina; Diether Lambrechts; Stein Aerts; Cédric Blanpain; Jean-Christophe Marine
Journal:  Nat Med       Date:  2016-07-04       Impact factor: 53.440

6.  53BP1 and the LINC Complex Promote Microtubule-Dependent DSB Mobility and DNA Repair.

Authors:  Francisca Lottersberger; Roos Anna Karssemeijer; Nadya Dimitrova; Titia de Lange
Journal:  Cell       Date:  2015-11-05       Impact factor: 41.582

7.  RNA-templated DNA repair.

Authors:  Francesca Storici; Katarzyna Bebenek; Thomas A Kunkel; Dmitry A Gordenin; Michael A Resnick
Journal:  Nature       Date:  2007-04-11       Impact factor: 49.962

8.  Nuclear position dictates DNA repair pathway choice.

Authors:  Charlène Lemaître; Anastazja Grabarz; Katerina Tsouroula; Leonid Andronov; Audrey Furst; Tibor Pankotai; Vincent Heyer; Mélanie Rogier; Kathleen M Attwood; Pascal Kessler; Graham Dellaire; Bruno Klaholz; Bernardo Reina-San-Martin; Evi Soutoglou
Journal:  Genes Dev       Date:  2014-11-03       Impact factor: 11.361

9.  53BP1-RIF1-shieldin counteracts DSB resection through CST- and Polα-dependent fill-in.

Authors:  Zachary Mirman; Francisca Lottersberger; Hiroyuki Takai; Tatsuya Kibe; Yi Gong; Kaori Takai; Alessandro Bianchi; Michal Zimmermann; Daniel Durocher; Titia de Lange
Journal:  Nature       Date:  2018-07-18       Impact factor: 49.962

10.  RNA phase transitions in repeat expansion disorders.

Authors:  Ankur Jain; Ronald D Vale
Journal:  Nature       Date:  2017-05-31       Impact factor: 49.962

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  7 in total

Review 1.  Biomolecular Condensation: A New Phase in Cancer Research.

Authors:  Anupam K Chakravarty; Daniel J McGrail; Thomas M Lozanoski; Brandon S Dunn; David J H Shih; Kara M Cirillo; Sueda H Cetinkaya; Wenjin Jim Zheng; Gordon B Mills; S Stephen Yi; Daniel F Jarosz; Nidhi Sahni
Journal:  Cancer Discov       Date:  2022-09-02       Impact factor: 38.272

2.  A diRNA-protein scaffold module mediates SMC5/6 recruitment in plant DNA repair.

Authors:  Jieming Jiang; Xiaolin Ou; Danlu Han; Zhipeng He; Song Liu; Ning Mao; Zhonghui Zhang; Chang-Lian Peng; Jianbin Lai; Chengwei Yang
Journal:  Plant Cell       Date:  2022-09-27       Impact factor: 12.085

Review 3.  Walking a tightrope: The complex balancing act of R-loops in genome stability.

Authors:  Joshua R Brickner; Jada L Garzon; Karlene A Cimprich
Journal:  Mol Cell       Date:  2022-05-03       Impact factor: 19.328

Review 4.  V(D)J Recombination: Recent Insights in Formation of the Recombinase Complex and Recruitment of DNA Repair Machinery.

Authors:  Shaun M Christie; Carel Fijen; Eli Rothenberg
Journal:  Front Cell Dev Biol       Date:  2022-04-29

Review 5.  Histone H2A variants: Diversifying chromatin to ensure genome integrity.

Authors:  Philipp Oberdoerffer; Kyle M Miller
Journal:  Semin Cell Dev Biol       Date:  2022-03-21       Impact factor: 7.499

Review 6.  Immediate-Early, Early, and Late Responses to DNA Double Stranded Breaks.

Authors:  Shaylee R Kieffer; Noel F Lowndes
Journal:  Front Genet       Date:  2022-01-31       Impact factor: 4.599

Review 7.  Modulating biomolecular condensates: a novel approach to drug discovery.

Authors:  Diana M Mitrea; Matthäus Mittasch; Beatriz Ferreira Gomes; Isaac A Klein; Mark A Murcko
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  7 in total

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