Literature DB >> 34251527

Exiguobacterium algae sp. nov. and Exiguobacterium qingdaonense sp. nov., two novel moderately halotolerant bacteria isolated from the coastal algae.

Fangming Liu1, Yangjie Li2, Wenxuan He3,4, Wenqi Wang5, Jinshui Zheng2, Dechao Zhang6,7,8.   

Abstract

Two Gram-stain-positive, facultatively anaerobic, rod-shaped bacterial strains, S126T and S82T, were isolated from coastal algae of China. Strains S126T and S82T are halotolerant and could grow in the presence of 0-13% NaCl and 0-14% NaCl, respectively. The two strains shared 98.9% 16S rRNA gene sequence similarity with each other and 93.4-99.8% similarity with type strains of Exiguobacterium species. The major fatty acids (> 10%) of strains S126T and S82T were iso-C17:0, iso-C13:0, anteiso-C13:0 and iso-C15:0. The predominant quinones of strains S126T and S82T were MK-7 and MK-8. The polar lipid profiles of strain S126T and S82T contained diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The cell-wall peptidoglycans of both strains S126T and S82T were of the A3α L-Lys-Gly type. The average nucleotide identity (ANI) and average nucleotide index (AAI) between strains S126T and S82T and type strains of Exiguobacterium species were all below the thresholds to discriminate bacterial species, indicating that they constitute two novel species in the genus Exiguobacterium. Based on polyphasic taxonomy characterization and genomic aspects, the names Exiguobacterium algae sp. nov. and Exiguobacterium qingdaonense sp. nov. are proposed for the two novel species, with type strains being S126T (= CGMCC 1.17116T = KCTC 43079 T) and S82T (= CGMCC 1.17115T = KCTC 43078T), respectively.
© 2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  Algae; Comparative genomics; Core genome; Exiguobacterium

Year:  2021        PMID: 34251527     DOI: 10.1007/s10482-021-01594-8

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  31 in total

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Journal:  Can J Biochem Physiol       Date:  1959-08

2.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

3.  Fast and sensitive protein alignment using DIAMOND.

Authors:  Benjamin Buchfink; Chao Xie; Daniel H Huson
Journal:  Nat Methods       Date:  2014-11-17       Impact factor: 28.547

4.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

5.  Exiguobacterium profundum sp. nov., a moderately thermophilic, lactic acid-producing bacterium isolated from a deep-sea hydrothermal vent.

Authors:  Sylvaine Crapart; Marie-Laure Fardeau; Jean-Luc Cayol; Pierre Thomas; Christian Sery; Bernard Ollivier; Yannick Combet-Blanc
Journal:  Int J Syst Evol Microbiol       Date:  2007-02       Impact factor: 2.747

6.  Exiguobacterium undae sp. nov. and Exiguobacterium antarcticum sp. nov.

Authors:  Anja Frühling; Peter Schumann; Hans Hippe; Bettina Sträubler; Erko Stackebrandt
Journal:  Int J Syst Evol Microbiol       Date:  2002-07       Impact factor: 2.747

7.  Genome Sequence of a Novel Polymer-Grade L-Lactate-Producing Alkaliphile, Exiguobacterium sp. Strain 8-11-1.

Authors:  Xu Jiang; Yanfen Xue; Limin Wang; Bo Yu; Yanhe Ma
Journal:  Genome Announc       Date:  2013-08-15

8.  Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper.

Authors:  Jaime Huerta-Cepas; Kristoffer Forslund; Luis Pedro Coelho; Damian Szklarczyk; Lars Juhl Jensen; Christian von Mering; Peer Bork
Journal:  Mol Biol Evol       Date:  2017-08-01       Impact factor: 16.240

9.  trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.

Authors:  Salvador Capella-Gutiérrez; José M Silla-Martínez; Toni Gabaldón
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

10.  The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.

Authors:  Brandi L Cantarel; Pedro M Coutinho; Corinne Rancurel; Thomas Bernard; Vincent Lombard; Bernard Henrissat
Journal:  Nucleic Acids Res       Date:  2008-10-05       Impact factor: 16.971

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