Tehreem Tahir1, Mirza Imran Shahzad1, Rukhsana Tabassum2, Muhammad Rafiq3, Muhammad Ashfaq2, Mubashir Hassan4, Katarzyna Kotwica-Mojzych5, Mariusz Mojzych6. 1. Institute of Biochemistry, Biotechnology and Bioinformatics, Faculty of Science, The Islamia University of Bahawalpur, Bahawalpur, Pakistan. 2. Department of Chemistry, Faculty of Science, The Islamia University of Bahawalpur, Bahawalpur, Pakistan. 3. Department of Physiology and Biochemistry, Faculty of Bio-Sciences, Cholistan University of Veterinary and Animal Sciences, Bahawalpur, Pakistan. 4. Institute of Molecular Biology & Biotechnology, The University of Lahore (Defense Road Campus), Lahore, Pakistan. 5. Department of Histology, Embryology and Cytophysiology, Medical University of Lublin, Lublin, Poland. 6. Department of Chemistry, Siedlce University of Natural Sciences and Humanities, Siedlce, Poland.
Abstract
In the present study, a series of azo derivatives (TR-1 to TR-9) have been synthesised via the diazo-coupling approach between substituted aromatic amines with phenol or naphthol derivatives. The compounds were evaluated for their therapeutic applications against alpha-glucosidase (anti-diabetic) and pathogenic bacterial strains E. coli (gram-negative), S. aureus (gram-positive), S. aureus (gram-positive) drug-resistant strain, P. aeruginosa (gram-negative), P. aeruginosa (gram-negative) drug-resistant strain and P. vulgaris (gram-negative). The IC50 (µg/mL) of TR-1 was found to be most effective (15.70 ± 1.3 µg/mL) compared to the reference drug acarbose (21.59 ± 1.5 µg/mL), hence, it was further selected for the kinetic studies in order to illustrate the mechanism of inhibition. The enzyme inhibitory kinetics and mode of binding for the most active inhibitor (TR-1) was performed which showed that the compound is a non-competitive inhibitor and effectively inhibits the target enzyme by binding to its binuclear active site reversibly.
In the present study, a series of azo derivatives (TR-1 to TR-9) have been synthesised via the diazo-coupling approach between substituted aromatic amines with phenol or naphthol derivatives. The compounds were evaluated for their therapeutic applications against alpha-glucosidase (anti-diabetic) and pathogenic bacterial strains E. coli (gram-negative), S. aureus (gram-positive), S. aureus (gram-positive) drug-resistant strain, P. aeruginosa (gram-negative), P. aeruginosa (gram-negative) drug-resistant strain and P. vulgaris (gram-negative). The IC50 (µg/mL) of TR-1 was found to be most effective (15.70 ± 1.3 µg/mL) compared to the reference drug acarbose (21.59 ± 1.5 µg/mL), hence, it was further selected for the kinetic studies in order to illustrate the mechanism of inhibition. The enzyme inhibitory kinetics and mode of binding for the most active inhibitor (TR-1) was performed which showed that the compound is a non-competitive inhibitor and effectively inhibits the target enzyme by binding to its binuclear active site reversibly.
Aromatic azo compounds have been extensively studied in recent years due to their broad-spectrum pharmaceutical applicability mainly because of their cost-effective, simplistic and reproducible synthetic procedure. The combination of aromatic substituted amines with coupling agents could yield a variety of azo compounds having versatile biological properties. The presence of heterocyclic ring and transition metals in conjugation to azo pharmacophore enhances the bio-potency of the azo dyes. Ravi and colleagues studied the anti-mycobacterial and DNA cleaving efficiency of 2-aminothiazole incorporated azo derivatives, the most active derivative found to be intervened with the active amino acids of Mycobacterium tuberculosis. Debnath et al. evaluated the antimicrobial efficacy of triorganotin(IV) azo-carboxylates against the bacterium (S. aureus) and the fungus (F. oxysporum) with significant antimicrobial properties compared to the standard antibiotics. Similarly, Ispir and colleagues examined the anti-oxidant and anti-proliferative potential of azo-azomethine ligands and their metal complexes with Zn(II), Co(II) and Cu(II). Among the series, the metal complexes bearing azo dyes exhibited the best radical scavenging and inhibitory potencies compared to the standards against the studied cell lines. On the similar interest, Matada et al. prepared a series of heterocyclic azo ligands and their metal complexes with Cu(II), Co(II), Ni(II) and Fe(III), the synthesised series was therapeutically evaluated for their anti-cancer activity. It was observed that the metal chelates of Cu(II) and Fe(III) were proved to be potential anticancer agents (Figure 1).
Figure 1.
Some reported bioactive azo derivatives.
Diabetes Mellitus (DM) is a well characterised metabolic disease that results in defects in insulin output i.e. insulin secretion (type-1 diabetes) and insulin action (type-2 diabetes) or both. Type-2 diabetes accounts for 70–80% of all diabeticpatients worldwide and it leads to postprandial hyperglycaemia. One of the critical strategies to prevent postprandial hyperglycaemia is to inhibit the enzymes which are responsible for the carbohydrate hydrolysis e.g. α-amylase and α-glucosidase. In this interest, several α-glucosidase inhibitors are being administered in the treatment of type-2 diabetes such as acarbose (valienamine), voglibose (valiolamine) and miglitol (desoxynojirimycin). However, the prolonged use of these agents could result in various side effects such as vomiting, pomposity, diarrhoea and flatulence. Therefore, the discovery and development of new and potent α-glucosidase inhibitors have gained immense attention in pharmaceutical chemistry. In this regard, a new derivative from a series of sulphonamide containing diarylpentadienones was found to be a promising inhibitor of α-glucosidase (IC50 5.69 ± 0.5 µM) with the competitive mode of inhibition, some new benzamide derivatives of thiourea (IC50 range 20.44 − 333.41 µM) were evaluated as good candidates for targeting α-glucosidase enzyme. The literature also suggested that the derivatives of triazole thiones were found to be effective inhibitors of α-glucosidase (IC50 value 36.11 μg/mL). The recent research has suggested that polyphenols are excellent anti-diabetic agents, recently in this interest; the α-glucosidase inhibitory potential of flavonoids was compared with acarbose with the sequence of inhibitory potential as scutellarein > nepetin > apigenin > hispidulin > acarbose. Dihydropyridine derivatives (IC50 range 2.21 ± 0.06 − 9.97 ± 0.08 μM) have been reported as potential α-glucosidase inhibitors.Phenolic compounds are simple and naturally occurring organic compounds bearing an aromatic ring with one or more hydroxyl groups (with or without side chain), received considerable attention due to their biological functions such as anti-carcinogen, antimicrobial, anti-ageing, anti-diabetic, anti-mutagen and immunostimulatory roles,. Among the most extensively administered phenolic drugs, salbutamol sulphate (SLB), terbutaline sulphate (TBT) and thymol (THY) are highly recognised β2-adrenergic receptor agonists, antiseptic and antimicrobial agents respectively. Drug resistance (DR) has become a worldwide threat challenging a wide range of disciplines, including; infection control, drug design and virulence genes. The antimicrobial drug resistance (AMR) develops the manipulative properties of bacteria to counter the standard antibiotics and hence obstructing the treatment of infection. The classes of antibacterial agents which offer resistance to certain bacterial infections constitute the serious therapeutic challenge urging the need for the discovery and development of novel antibiotics,. In this regard, a new series of azo-phenol derivatives was synthesised and evaluated in vitro against six clinical bacterial strains including the drug-resistant P. aeruginosa. It was revealed from the experimental data that some of the azo-phenol compounds significantly inhibited the growth of drug-resistant bacteria compared to the standard drug trimethoprim-sulfamethoxazole. The studies also suggested that phenolic cinnamic acid derivatives are selective inhibitors of cyclooxygenase (COX-1 and COX-2) enzymes, Similarly, phenolic N-monosubstituted carbamates have proven to be effective anti-mycobacterial drug targets against broad-spectrum mycobacterial strains (Mycobacterium tuberculosis H37Ra, H37Rv including multidrug and extensively drug-resistant strains, Mycobacterium avium, Mycobacterium kansasii, Mycobacterium aurum and Mycobacterium smegmatis).Hydroxytriazenes are a class of compounds containing alpha hydroxyl group relative to the diazo group, have versatile pharmacological properties including lipid-lowering, antidiabetic, antioxidant, anti-inflammatory, antimicrobial and analgesic agents. In view of this, an attempt has been made to study the anti-diabetic, anti-inflammatory and antioxidant effects of sulpha drugs based hydroxytriazenes. It was suggested that the compounds showed significant α-amylase and α-glucosidase inhibition potential with IC50 values ranging from 122–341 µg/mL. The promising anti-inflammatory (89% after 4 h of treatment) and radical scavenging potential (IC50 54.12 µg/mL) highlighted the multifunctional role of hydroxytriazenes. It was also concluded that the polar functionalities like –OH around the heterocyclic rings of triazene compounds enhanced the inhibition potential against glucosidase and amylase. The azo fused with synthetic phenolic molecules such as butylated hydroxyanisole, phlorogucinal, 2,4-di-tert-butylphenol and 2,6-di-tert-butylphenol were proved to be remarkable antibacterial, antioxidant and antitumor agents. Similarly, a series of new phenol ether derivatives were found to be excellent proteasome inhibitors. Some of the reported and commercially available phenolic drugs are given in Figure 2.
Figure 2.
Some of the commercially available and reported phenolic drugs in literature21–25.
Some reported bioactive azo derivatives.Some of the commercially available and reported phenolic drugs in literature21–25.Keeping in view the synthetic feasibility of azo derivatives and diverse therapeutic properties of phenolic compounds fused with azo moiety, the present study aims at the synthesis, spectroscopic characterisation, biological evaluation, kinetic and molecular docking studies of diaryl azo-phenol derivatives. The structural identification of the synthesised azo-phenol derivatives was done by spectroscopic techniques (IR, NMR and HRMS) and the detailed screening was carried out by various in vitro biological assays with kinetic and in silico structure-activity relationship studies.
Materials and methods
Synthesis
Chemicals and equipment
All solvents and chemicals were of analytical grade and purchased from Sigma-Aldrich and Merck. Melting points were adjusted using a calibrated thermometer by digital melting point apparatus (SMA10 of Stuart Scientific Bibby Sterilin Ltd., UK) and stated in degrees centigrade (°C). Pre-coated silica TLC plates (60F254 Merck Ltd., Japan) for determining purification, magnetic stirrer (VELP Scientific England) for stirring and micropipettes (ZX58143 and ZX57677) for quantitative transfer of liquid were used. The NMR spectra (1H and 13C) were recorded in DMSO-d6 using Varian spectrometer 400 MHz. The high-resolution accurate-mass (HRAM) detection was performed on the Thermo Scientific Q Exactive apparatus. ELISA reader (BioTek) Epoch 2 by Agilent technologies, USA.
General method for the synthesis of azo-compounds
The general procedure for the synthesis of asymmetric aromatic azo compounds followed the traditional approach i.e. the coupling of aryl diazonium salts with electron-rich aromatics such as resorcinol and naphthol derivatives (Scheme 1). Briefly, equimolar concentration (10 mmol) of substituted amines (4-nitro aniline, p-toluidine and 3-amino,2-chloro pyridine) were mixed with the cold aqueous solution of sodium nitrite (10 mmol) in a 100 mL round bottom flask at 0–5 °C. To this reaction mixture, 3 M HCl was added drop-wise with continuous stirring for 20 min until the formation of the diazonium salt at the same temperature. Then immediately, the cold basic solution of respective phenol derivatives (resorcinol, α-naphthol and β-naphthol) (10 mmol) was slowly added to the diazonium salt mixture and the stirring was continued for another 3 h at 0–5 °C. TLC was employed to monitor the progress of the reaction by the combination of various solvent systems. Once the reaction is completed, the resulting crude azo derivatives were filtered off, washed several times with deionised water, air-dried and purified by recrystallization.
Scheme 1.
Synthetic scheme employed for the synthesis of azo derivatives (TR-1 to TR-9).
Synthetic scheme employed for the synthesis of azo derivatives (TR-1 to TR-9).
The α-glucosidase inhibition assay was performed as described previously. In summary, the stock solution of the enzyme from Saccharomyces Cerevisiae (0.2 U/mL) was prepared in 0.05 M sodium phosphate buffer pH 6.8. In microtitre plate, 70 µL of phosphate buffer, 10 µL of enzyme and 10 µL of varying concentrations of azo derivatives (25 µg, 12.5 µg, 6.25 µg, 3.12 µg and 1.56 µg/mL) were mixed and incubated at 37 °C for 15 min. After incubation, 10 µL of the substrate, p-nitrophenyl α-D-glucopyranoside (pNPG, 5 mM solution in 0.05 M phosphate buffer) was added to the aboveprepared mixture and incubated again under the same experimental conditions. The reaction was stopped with the addition of 0.1 M Na2CO3 and OD405 was taken by a 96-well ELISA reader. The experiment was performed in triplicate. Acarbose was used as positive control while DMSO was a negative control. The extent of inhibition showed by the tested azo derivatives was calculated by % inhibition formula and IC50 (µg/mL) was determined by Graph pad Prism 6.0.
Kinetic analysis of α-glucosidase inhibition
A series of kinetic assays was performed to determine the inhibition kinetics of the most active inhibitor from the series of tested compounds by following method,. The potential inhibitor with concentrations 0.00, 0.062, 0.125, 0.25, 0.5 mM was selected for kinetic studies. The substrate (pNPG) concentration was optimised from 5 to 40 mM in all kinetic studies. Pre-incubation and measurement time was the same as discussed in α-glucosidase inhibition assay. The assay was continuously monitored at 405 nm for 5 min at 30 s intervals in the microplate reader after the addition of the enzyme. The inhibition type on the enzyme was assayed by Lineweaver–Burk plots of the inverse of velocities (1/V) versus the inverse of substrate concentration 1/[S] mM−1, and the inhibition constant Ki was determined by two ways (Dixon plot of 1/V versus inhibitor concentrations) as well as secondary replot of slope versus inhibitor concentrations from Lineweaver–Burk plot.
Inhibition mechanism of potential inhibitor
The inhibitory mechanism against α-glucosidase by most active inhibitor from the tested series of azo derivatives was investigated. The plot of the remaining enzyme activity versus the concentrations of the enzyme at different inhibitor concentrations (0.00, 0.062, 0.125, 0.25 and 0.5 mM) was calculated.
In silico molecular docking
Retrieval of α-glucosidase from protein data bank (PDB)
The crystal structure of α-glucosidase having PDBID: 4J5T was accessed from the Protein Data Bank (PDB) (http://www.rcsb.org/4j5t). The retrieved protein structure was minimised by using the conjugate gradient algorithm and amber force field in UCSF Chimaera 1.10.1. The stereo-chemical properties, Ramachandran graph and values of α-glucosidase were assessed by Molprobity server, while the Ramachandran graph was generated by Discovery Studio 2.1 Client. The protein architecture and statistical percentage values of helices, beta-sheets, coils and turns were accessed by VADAR 1.8.
In silico drugs designing
The designed ligands (TR1-9) were sketched in drawing ACD/ChemSketch tool and retrieved in PDB format. Furthermore, the UCSF Chimaera 1.10.1 tool was employed to energy minimisation of each drug separately having default parameters such as steepest descent steps 100 with step size 0.02 (Å), conjugate gradient steps 100 with step size 0.02 (Å) and update interval was fixed at 10. Finally, Gasteiger charges were added using Dock Prep in drugs to obtain a good structural conformation for docking analysis. A molecular docking experiment was employed on synthesised ligands against α-glucosidase by using PyRx virtual screening tool with AutoDock VINA Wizard approach . The grid box centre values were adjusted as for X= −19.2552, Y= −21.0275 and Z = 4.2779, respectively. We have adjusted sufficient grid box size big enough on biding pocket residues to allow the ligand to move freely in the search space. The default exhaustiveness value = 8 was adjusted in both dockings to maximise the binding conformational analysis. In all docked complexes, the drug’s conformational poses were keenly observed to obtain the best docking results. The docked complexes were evaluated on the lowest binding energy (Kcal/mol) values and structure-activity relationship analyses. The graphical depictions of all the docking complexes were carried out using Discovery Studio (2.1.0).
Antibacterial activity
The prepared azo derivatives were screened for their antibacterial activity against six bacterial strains obtained from hospital isolates i.e. gram positive (S. aureus, S. aureus (DR)) and gram-negative (E. coli, P. aeruginosa, P. aeruginosa (DR), P. vulgaris). All the strains were confirmed by biochemical identification and drug susceptibility methods. The antibacterial evaluation was done by agar disc diffusion method, and MIC was determined. In summary, a 48-h old inoculum having ∼0.48 OD600, of the above-mentioned bacterial strains was spread on the solidified trypticase soy agar media and Whatman no. 1 filter paper discs (5 mm in diameter) soaked with the title compounds (10 µL/disc of 10 mg/mL) were placed on the plates. Ampicillin and moxifloxacin were used as positive controls and DMSO as negative control respectively. The plates were incubated at 37 °C for 48 h, post-inoculation and diameters for the zone of inhibition were calculated in millimetres (mm) and MIC (µg/mL) was determined for the most active compounds.
Antibiofilm assay
The antibiofilm activity of the synthesised azo derivatives was assessed by microtitre plate-based crystal violet method against respective bacterial strains i.e. gram-positive (S. aureus, S. aureus (DR)) and gram-negative (P. aeruginosa, P. aeruginosa (DR)). In brief, 10 µL bacterial suspension, 100 µL trypticase soy broth and 10 µL (10 mg/mL) of test compounds were added in the wells in duplicates and incubated at 37 °C overnight. Ampicillin and moxifloxacin were used as positive controls. After the aspiration of planktonic cells, the biofilm was fixed with 99% methanol. The wells were then washed with 0.1 M sterile PBS (pH = 6.9) thrice and air-dried. Then, 200 µL of crystal violet solution (2%) was added to all wells. After 15 min, the excess of the crystal violet dye was removed and the wells were washed again with PBS. Then, the cell-bound crystal violet was dissolved in 33% acetic acid. The biofilm growth was quantified in terms of OD575 nm using an ELISA plate reader and biofilm hydrolysis was calculated by % inhibition formula.
Results and discussion
Chemistry
The targeted diaryl aromatic azo compounds were synthesised by the facile diazo-coupling approach (Scheme 1) described previously in literature. The combination of the substituted amines (4-nitro aniline, p-toluidine and 3-amino,2-chloro pyridine) with phenol derivatives (resorcinol, α-naphthol and β-naphthol) produced azo-phenol compounds in moderate to good yields (40–80%). The purification of the synthesised compounds was achieved through re-crystallization and TLC was employed to confirm the purification status. The structures of the purified diaryl azo-phenol derivatives were elucidated by FTIR, 1H-NMR, 13C-NMR and mass spectrometry (HRMS). The FTIR spectra were recorded in the range of 4000–600 cm−1, the characteristic prominent peaks of synthesised azo-phenol derivatives were observed. The disappearance of NH2 stretch at ∼3500 cm−1, a broad OH stretch overlapped with the aromatic C–H stretching vibrations around 3300–3000 cm−1 and a characteristic N=N peak at ∼1500 have been observed in all FTIR spectra indicating the presence of the said functional groups. In the 1H-NMR spectra, recorded in deuterated DMSO, the disappearance of NH2 signal in the range of 5.0−4.0 ppm characteristic for the used amines was observed, while the amount and type of signals in the range of 6.0−9.0 ppm correspond exactly to the number of aromatic protons. Similarly, the numbers of signals in the 1 C-NMR spectra for the obtained derivatives were consistent with their structure. High-resolution mass spectrometry (HRMS) was also used to identify and confirmed the structure of azo compounds. The obtained spectroscopic data was found consistent with the reported literature in this regard. All detailed spectra (FTIR, 1H and 13C-NMR, HRMS) are given in Supplementary material.
Inhibitory potential against α-glucosidase
All the title compounds (TR-1 to TR-9) were evaluated for their inhibitory potential against α-glucosidase enzyme. At a concentration of 250 µg/mL, almost all the tested azo-phenol derivatives exhibited 60–98% anti-diabetic activity, except TR-4 (43%) and TR-5 (56%). It was noticed that the diaryl azo derivatives with two hydroxyl groups at ortho and meta-positions (TR-1, TR-6, TR-7) have enhanced α-glucosidase inhibition potential with IC50 values 15.70 ± 1.3, 53.7 ± 3.2 and 29.7 ± 2.8 respectively, compared to the other active derivatives (TR-2, TR-3, TR-4 and TR-5) with one hydroxyl group at any position on the phenyl ring. The present results were found to be in good agreement with the previous studies establishing the fact that the number and position of hydroxyl groups on the phenyl ring could increase or decrease the inhibitory activity of the compounds against α-glucosidase by effecting the magnitude of hydrogen bond interactions with the protein. On the other hand, in the case of diaryl azo derivativesTR-7, TR-8 and TR-9, the notable anti-diabetic potential could possibly be due to the introduction of the nitrogen-containing heterocyclic pharmacophore with 4–Cl group. The promising anti-diabetic potential exerted by the derivatives TR-7, TR-8 and TR-9 is also justified by the minimum binding energy values −7.50, −8.20 and −8.30 Kcal/mol respectively. The following trend in the decreasing order of IC50 (µg/mL) was observed: TR-5>TR-3>TR-2>TR-9>TR-6>TR-8>TR-7>TR-1. The IC50 of TR-1 was found to be effective (15.70 ± 1.3 µg/mL) compared to the reference drug acarbose (21.59 ± 1.5 µg/mL) (Table 1), hence, it was further selected for the kinetic and docking studies in order to illustrate the mechanism of inhibition.
Table 1.
In vitro α-glucosidase inhibitory potential of diaryl azo-phenol derivatives
No.
Sample code
% Inhibition
IC50 (µg/mL)
Binding energy (Kcal/mol)
250 (µg/mL)
125 (µg/mL)
62.5 (µg/mL)
31.2 (µg/mL)
15.62 (µg/mL)
1
TR-1
95
88
78
68
49
15.70 ± 1.3
–7.80
2
TR-2
60
55
42
30
16
110.2 ± 7.8
–8.20
3
TR-3
62
54
38
25
12
116.9 ± 8.6
–8.00
4
TR-4
43
35
27
13
7
nt
nt
5
TR-5
56
49
35
22
14
153.4 ± 11.5
–8.40
6
TR-6
87
63
55
38
22
53.7 ± 3.2
–7.60
7
TR-7
87
77
68
52
34
29.7 ± 2.8
–7.50
8
TR-8
98
75
63
45
29
36.7 ± 3.1
–8.20
9
TR-9
78
63
58
39
22
54.4 ± 3.3
–8.30
10
Acarbose
92
85
73
62
40
21.59 ± 1.5
nt
Nt: mean not determined. IC50: 50% inhibitory concentration (means ± SEM of triplicate experimental values).
In vitro α-glucosidase inhibitory potential of diaryl azo-phenol derivativesNt: mean not determined. IC50: 50% inhibitory concentration (means ± SEM of triplicate experimental values).
Kinetic analysis
To understand the inhibitory mechanism of the most potent compound against α-glucosidase, kinetic studies were conducted. Kinetic studies showed a concentration-dependent inhibition of α-glucosidase by the inhibitors. Continuous monitoring of the reaction showed a marked decrease in reaction rate in the presence of the inhibitors, which is ultimate, indicated the decrease in the final absorbance when compared with controls containing no inhibitor. The potency of inhibition exhibited by the compounds varied depending on the presence and position of different substitutions and on the class of compounds Inhibition kinetics was analysed by Lineweaver–Burk plot and Dixon plots to determine the type of inhibition and inhibition constant (Ki).From the kinetic analyses, the Lineweaver–Burk plot of 1/V versus 1/[S] in the presence of different concentrations of TR-1 showed that all the straight line intersects on the X-axis in the second quadrant, the analysis showed that V decreased with constant K in the presence of increasing concentrations of compounds TR-1. This behaviour of the compound indicated that the compound TR-1 is a non-competitive inhibitor against α-glucosidase (Figure 3(a)). The inhibition constant Ki for compounds TR-1 was calculated by two methods, secondary replot of slope from Lineweaver-Burk plot versus inhibitor concentrations (Figure 3(b)) and by Dixon plot as shown in (Figure 3(c)) respectively. All the kinetics parameters are written in Table 2. The inhibitory mechanism of α-glucosidase by varying concentrations of the most potent compound TR-1 by the plots of the remaining enzyme activity versus the enzyme concentration was also studied. The results suggested that the compound behaves reversibly (Figure 4).
Figure 3.
TR-1 a) Lineweaver-Burk plots for the inhibition of α-Glucosidase by various concentrations 0.00, 0.062, 0.125, 0.25 and 0.5 mM of compound TR-1 in the presence of different concentrations 5, 10, 20 and 40 mM of substrate pNPG (p-nitrophenyl-α-D-glucopyranoside). b) Secondary replot of the Lineweaver–Burk plot between the slopes of each line on Lineweaver–Burk plot vs. different concentrations of inhibitor. c) Dixon plot of reciprocal of rate of reaction (velocities) versus different concentrations of compounds TR-9 in the presence of various concentrations (5, 10, 20 and 40 mM) of pNPG.
Table 2.
Kinetic parameters of α-glucosidase inhibition activity for the compound TR-1.
Compounds
Dose (mM)
Vmax (ΔA/S)
Km (mM)
Inhibition type
Inhibition
Ki(mM)
TR-1
0.00
0.25
20
Non-competitive
reversible
0.22
0.062
0.166
20
0.125
0.125
20
0.25
0.090
20
0.50
0.071
20
Vmax is the reaction velocity.
Km is the Michaelis–Menten constant.
Ki is the EI dissociation constant.
Figure 4.
The catalytic activity of α-glucosidase as a function of enzyme concentration at different concentrations of compound TR-1.
TR-1 a) Lineweaver-Burk plots for the inhibition of α-Glucosidase by various concentrations 0.00, 0.062, 0.125, 0.25 and 0.5 mM of compound TR-1 in the presence of different concentrations 5, 10, 20 and 40 mM of substrate pNPG (p-nitrophenyl-α-D-glucopyranoside). b) Secondary replot of the Lineweaver–Burk plot between the slopes of each line on Lineweaver–Burk plot vs. different concentrations of inhibitor. c) Dixon plot of reciprocal of rate of reaction (velocities) versus different concentrations of compounds TR-9 in the presence of various concentrations (5, 10, 20 and 40 mM) of pNPG.The catalytic activity of α-glucosidase as a function of enzyme concentration at different concentrations of compound TR-1.Kinetic parameters of α-glucosidase inhibition activity for the compound TR-1.Vmax is the reaction velocity.Km is the Michaelis–Menten constant.Ki is the EI dissociation constant.
Molecular docking analyses
α-Glucosidase structural assessment
The α-glucosidase is a class of hydrolase enzyme and is actively involved in the digestion of food carbohydrates. The α-glucosidase comprises 811 amino acids with the residual architecture of 35% helices, 25% β sheets and 38% coils. The X-ray diffraction studies of α-glucosidase confirmed its resolutions 2.04 Å. The Ramachandran plots of α-glucosidase indicated that 97.6% of residues were present in favored regions. The Ramachandran graphs values showed the good accuracy of phi (φ) and psi (ψ) angles among the coordinates of target protein (Figure 5)
Figure 5.
3D structure of α-glucosidase enzyme.
3D structure of α-glucosidase enzyme.
Binding pocket and deltamethrin and permethrin binding conformations
A molecular docking experiment is the best approach to study the binding conformation of ligands against target protein. The binding pocket analysis showed that deltamethrin and permethrin were confined in the active region of α-glucosidase. Results showed that the drugs bound in the active site having different conformational poses. The docked complexes of the drug against tyrosinase were analysed on the basis of the lowest binding energy values (Kcal/mol) and hydrogen/hydrophobic interaction pattern. Results showed that all the drugs exhibited good docking energy values and showed their interaction within the active region of the target protein (Figure 5). The docking energy values of all the docking complexes were calculated by using Equation (1).Here, ΔGgauss: attractive term for dispersion of two gaussian functions, ΔGrepulsion: square of the distance if closer than a threshold value, ΔGhbond: ramp function – also used for interactions with metal ions, ΔGhydrophobic: ramp function, ΔGtors: proportional to the number of rotatable bonds. In docking, energy results compound selected as best having more than 2.5 Kcal/mol energy value different compared to other compounds. The standard error for Autodock is reported as 2.5 Kcal/mol (http://autodock.scripps.edu/). The present docking results justified that the energy value difference among all docking complexes was comparable with the standard error value. Therefore, based on the basis of both in vitro and in silico docking energy results, deltamethrin and permethrin were ranked as the best drugs that showed good inhibitory potential against targeted enzyme as compared to all other derivatives. The docking energy values of the synthesised ligands (TR1-9) against α-glucosidase are presented in Table 1.
Binding pocket and hydrogen binding analysis
Figure 6 showed the binding pocket prediction and interactions of all ligands at conformational positions. All the ligands (TR1-9) bind within the active region of α glucosidase which ensures the stability and reliability of docking results. In most of the ligands, oxygen atoms were confined at the outer region of the binding pocket whereas, the benzene ring part showed inside the binding pocket.
Figure 6.
Binding pocket prediction and interactions of all ligands (TR1-9) against α-glucosidase.
Binding pocket prediction and interactions of all ligands (TR1-9) against α-glucosidase.Based on in vitro results, TR-1 has selected for detail binding interactions. The docking results showed that TR-1 formed two at different residual positions hydrogen bond. The hydroxyl group of TR-1 formed a hydrogen bond with Gly546 and Trp690 having bond distances of 1.87 and 1.92 Å, respectively. In docking results, TR-1 binds within the active site and the bond lengths were comparable with the standard value (<3 Å) (Figure 7). Our docking results were well correlated with a previously published article, confirming the accuracy of our docking results.
Figure 7.
Molecular docking interaction of TR-1 against target protein.
Molecular docking interaction of TR-1 against target protein.Supplementary data (S1): The α-glucosidase Ramachandran graph is presented the residual position in the favour region (pink boundary) by evaluating the Psi (φ) and Phi (ψ) angles. Most of the residues (green circle) lie in favour region while only ten poor rotamers are present in the outer region.
Antimicrobial potential
The antibacterial results of the prepared azo-phenol derivatives are displayed in (Table 3) and are expressed quantitatively in MIC (µg/200 µL). The antimicrobial results of synthesised azo derivatives exhibited good to moderate broad-spectrum activity against screened pathogens (S. aureus, P. aeruginosa, E. coli and P. vulgaris). Among the studied title compounds, TR-1, TR-4, TR-6 displayed promising antibacterial potential with an average MIC value of 125 µg/200 µL and was found to be dose-dependent, compared to the standard drugs i.e. ampicillin and moxifloxacin (MIC 62.5 µg/200 µL). It was also observed that the detrimental effect of derivatives on bacterial strains was due to the electron-withdrawing groups on the phenyl rings.
Table 3.
Minimum inhibitory concentration (µg/200 µL) of azo-phenol derivatives against below mentioned bacterial strains
Compound code
S. aureus(DS)
S. aureus(DR)
P. aeruginosa(DS)
P. aeruginosa(DR)
E. coli
P. vulgaris
250
125
62.5
250
125
62.5
250
125
62.5
250
125
62.5
250
125
62.5
250
125
62.5
TR-1
S
S
R
R
R
R
R
R
R
S
S
S
S
S
S
S
S
S
TR-2
R
R
R
S
S
R
S
R
R
R
R
R
S
R
R
R
R
R
TR-3
R
R
R
R
R
R
S
R
R
R
R
R
R
R
R
R
R
R
TR-4
S
S
S
S
S
R
S
S
R
S
S
R
R
R
R
S
S
S
TR-5
R
R
R
S
S
S
S
R
R
S
S
R
S
S
S
R
R
R
TR-6
S
S
S
S
S
S
S
S
R
R
R
R
S
R
R
S
S
S
TR-7
R
R
R
R
R
R
R
R
R
S
S
S
R
R
R
R
R
R
TR-8
S
S
R
R
R
R
S
R
R
R
R
R
R
R
R
R
R
R
TR-9
R
R
R
S
S
S
S
R
R
R
R
R
R
R
R
R
R
R
Ampicillin
S
S
S
--
--
--
S
S
S
--
--
--
S
S
S
S
S
S
Moxifloxacin
--
--
--
S
S
R
--
--
--
S
S
R
--
--
--
--
--
--
R: resistant; S: sensitive; –: not tested.
Minimum inhibitory concentration (µg/200 µL) of azo-phenol derivatives against below mentioned bacterial strainsR: resistant; S: sensitive; –: not tested.
Biofilm inhibition potency
The ability to produce biofilm increases the resistance of microbial cells against harmful environments. Bacterial adhesion to the surface, as well as cell-cell interaction via biological membrane, occurs due to electrostatic interactions. In order to inhibit biofilm formation, one strategy is to break the adhesive forces between bacterial cells and the surface which can be achieved with the use of various antimicrobial agents. In this aspect, the synthesised azo-phenol derivatives were tested for their hydrolysis potential against biofilm formation. Therefore, in the case of P. aeruginosa (DR), P. aeruginosa (DS); it was found that at the concentration of 0.5 mg/mL, all the derivatives except TR-4 and TR-7 (Figure 8(a)) were highly active against P. aeruginosa (DS) in biofilm inhibition (>70%) compared to the standard drug penicillin, which showed 60% inhibition at 0.5 mg/mL, however, against P. aeruginosa (DR) most of the azo derivatives were active (∼70%) in degrading biological membrane but TR-5 and TR-8 efficacy was found to be highest (80%) compared to the standard i.e. moxifloxacin (8b). Interestingly, the compound TR-7 showed 55% anti-biofilm potency against the drug-resistant strain of P. aeruginosa which was not found active against P. aeruginosa (DS). However, the rest of the tested derivatives were found less efficient in this regard.
Figure 8.
Biofilm hydrolysis potential of azo derivatives against P. aeruginosa.
Biofilm hydrolysis potential of azo derivatives against P. aeruginosa.Similarly, between S. aureus (DS) and S. aureus (DR) biofilm hydrolysis efficiencies, TR-1, TR-3, TR-8 showed potential greater than 70% compared to a penicillin (65%) and all the derivatives except TR-5, TR-7 and TR-8 showed efficacy equal to moxifloxacin (85%) at 0.5 mg/mL concentration respectively. It was also observed that the efficiency of the compound TR-8 was drastically decreased when it was challenged with the drug-resistant strain of S. aureus (Figure 9).
Figure 9.
Biofilm hydrolysis potential of azo-phenol compounds against S. aureus.
Biofilm hydrolysis potential of azo-phenol compounds against S. aureus.
Conclusions
In summary, a series of azo derivatives were synthesised via the diazo-coupling approach between substituted aromatic amines with phenol derivatives. All the synthesised compounds were obtained in good to moderate yields and analytically determined by spectroscopic methods (IR, NMR and HRMS). To the best of our knowledge, the anti-diabetic and antimicrobial activities of the reported derivatives were not evaluated earlier. Hence, the title compounds were biologically screened in vitro against α-glucosidase and pathogenic bacterial strains i.e. E. coli (gram-negative), S. aureus (gram-positive), S. aureus (gram-positive) drug-resistant strain, P. aeruginosa (gram-negative), P. aeruginosa (gram-negative) drug-resistant strain and P. vulgaris (gram-negative). The experimental data showed that the compounds under consideration have promising pharmacological properties to be used as potential drug leads for the treatment against diabetes mellitus (DM). The title compounds can also serve as the functional template in the antimicrobial resistance (AMR) issue as they have been screened against broad-spectrum bacteria including drug-resistant strains and exhibited good to moderate antimicrobial potential as almost all the compounds exhibited dose-dependent broad-spectrum activity against screened pathogens (MIC 125 µg/200 µL) and biofilm hydrolysis potential (>60 − 80%). The presence of an aromatic hydroxyl group and a heterocyclic pharmacophore fused with the azo moiety confirmed their high inhibitory potency against the α-glucosidase enzyme. The enzyme inhibitory kinetics, mode of binding and docking studies of the most potent inhibitors could help out to design good inhibitors against α-glucosidase to overcome the worldwide health problem of diabetes.Click here for additional data file.
Authors: Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson Journal: Proteins Date: 2003-02-15
Authors: Mubashir Hassan; Saba Shahzadi; Sung Y Seo; Hany Alashwal; Nazar Zaki; Ahmed A Moustafa Journal: Front Comput Neurosci Date: 2018-06-01 Impact factor: 2.380
Authors: Yahya S Alqahtani; Bandar A Alyami; Ali O Alqarni; Mater H Mahnashi; Anser Ali; Qamar Javed; Mubashir Hassan; Muhammad Ehsan Journal: Biomed Res Int Date: 2022-07-28 Impact factor: 3.246
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Figure 9.