Literature DB >> 34225772

Harnessing microbial wealth for lignocellulose biomass valorization through secretomics: a review.

Sivasamy Sethupathy1, Gabriel Murillo Morales1, Yixuan Li1, Yongli Wang1, Jianxiong Jiang1, Jianzhong Sun1, Daochen Zhu2.   

Abstract

The recalcitrance of lignocellulosic biomass is a major constraint to its high-value use at industrial scale. In nature, microbes play a crucial role in biomass degradation, nutrient recycling and ecosystem functioning. Therefore, the use of microbes is an attractive way to transform biomass to produce clean energy and high-value compounds. The microbial degradation of lignocelluloses is a complex process which is dependent upon multiple secreted enzymes and their synergistic activities. The availability of the cutting edge proteomics and highly sensitive mass spectrometry tools make possible for researchers to probe the secretome of microbes and microbial consortia grown on different lignocelluloses for the identification of hydrolytic enzymes of industrial interest and their substrate-dependent expression. This review summarizes the role of secretomics in identifying enzymes involved in lignocelluloses deconstruction, the development of enzyme cocktails and the construction of synthetic microbial consortia for biomass valorization, providing our perspectives to address the current challenges.

Entities:  

Keywords:  Depolymerization; Enzyme cocktails; Glycoside hydrolases; Lignocelluloses; Metasecretomics; Proteomics; Secretomics

Year:  2021        PMID: 34225772     DOI: 10.1186/s13068-021-02006-9

Source DB:  PubMed          Journal:  Biotechnol Biofuels        ISSN: 1754-6834            Impact factor:   6.040


  122 in total

1.  Microbial glycoside hydrolases as antibiofilm agents with cross-kingdom activity.

Authors:  Brendan D Snarr; Perrin Baker; Natalie C Bamford; Yukiko Sato; Hong Liu; Mélanie Lehoux; Fabrice N Gravelat; Hanna Ostapska; Shane R Baistrocchi; Robert P Cerone; Elan E Filler; Matthew R Parsek; Scott G Filler; P Lynne Howell; Donald C Sheppard
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-20       Impact factor: 11.205

Review 2.  Dynamic coordination of cytoskeletal and cell wall systems during plant cell morphogenesis.

Authors:  Daniel B Szymanski; Daniel J Cosgrove
Journal:  Curr Biol       Date:  2009-09-15       Impact factor: 10.834

Review 3.  An update on enzymatic cocktails for lignocellulose breakdown.

Authors:  A M Lopes; E X Ferreira Filho; L R S Moreira
Journal:  J Appl Microbiol       Date:  2018-07-10       Impact factor: 3.772

4.  The glycoside hydrolase 18 family chitinases are associated with development and virulence in the mosquito pathogen Pythium guiyangense.

Authors:  Danyu Shen; Jing Wang; Yumei Dong; Meiqian Zhang; Zhaoyang Tang; Qingyue Xia; Karani T Nyawira; Maofeng Jing; Daolong Dou; Ai Xia
Journal:  Fungal Genet Biol       Date:  2019-11-07       Impact factor: 3.495

Review 5.  Pathways for degradation of lignin in bacteria and fungi.

Authors:  Timothy D H Bugg; Mark Ahmad; Elizabeth M Hardiman; Rahman Rahmanpour
Journal:  Nat Prod Rep       Date:  2011-09-15       Impact factor: 13.423

Review 6.  Modeling catalytic reaction mechanisms in glycoside hydrolases.

Authors:  Joan Coines; Lluís Raich; Carme Rovira
Journal:  Curr Opin Chem Biol       Date:  2019-11-12       Impact factor: 8.822

Review 7.  Lignocellulose degradation: An overview of fungi and fungal enzymes involved in lignocellulose degradation.

Authors:  Martina Andlar; Tonči Rezić; Nenad Marđetko; Daniel Kracher; Roland Ludwig; Božidar Šantek
Journal:  Eng Life Sci       Date:  2018-06-27       Impact factor: 3.405

8.  Exopolysaccharide biosynthetic glycoside hydrolases can be utilized to disrupt and prevent Pseudomonas aeruginosa biofilms.

Authors:  Perrin Baker; Preston J Hill; Brendan D Snarr; Noor Alnabelseya; Matthew J Pestrak; Mark J Lee; Laura K Jennings; John Tam; Roman A Melnyk; Matthew R Parsek; Donald C Sheppard; Daniel J Wozniak; P Lynne Howell
Journal:  Sci Adv       Date:  2016-05-20       Impact factor: 14.136

9.  Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance.

Authors:  Gabriel Paës; David Navarro; Yves Benoit; Senta Blanquet; Brigitte Chabbert; Bernard Chaussepied; Pedro M Coutinho; Sylvie Durand; Igor V Grigoriev; Mireille Haon; Laurent Heux; Charlène Launay; Antoine Margeot; Yoshiharu Nishiyama; Sana Raouche; Marie-Noëlle Rosso; Estelle Bonnin; Jean-Guy Berrin
Journal:  Biotechnol Biofuels       Date:  2019-04-01       Impact factor: 6.040

Review 10.  Lignocellulose degradation mechanisms across the Tree of Life.

Authors:  Simon M Cragg; Gregg T Beckham; Neil C Bruce; Timothy D H Bugg; Daniel L Distel; Paul Dupree; Amaia Green Etxabe; Barry S Goodell; Jody Jellison; John E McGeehan; Simon J McQueen-Mason; Kirk Schnorr; Paul H Walton; Joy E M Watts; Martin Zimmer
Journal:  Curr Opin Chem Biol       Date:  2015-11-14       Impact factor: 8.822

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  3 in total

1.  Thermophilic Geobacillus WSUCF1 Secretome for Saccharification of Ammonia Fiber Expansion and Extractive Ammonia Pretreated Corn Stover.

Authors:  Aditya Bhalla; Jessie Arce; Bryan Ubanwa; Gursharan Singh; Rajesh K Sani; Venkatesh Balan
Journal:  Front Microbiol       Date:  2022-05-25       Impact factor: 6.064

2.  Stable and Functionally Diverse Versatile Peroxidases Designed Directly from Sequences.

Authors:  Shiran Barber-Zucker; Vladimir Mindel; Eva Garcia-Ruiz; Jonathan J Weinstein; Miguel Alcalde; Sarel J Fleishman
Journal:  J Am Chem Soc       Date:  2022-02-18       Impact factor: 15.419

3.  Gut Microbiota of Ostrinia nubilalis Larvae Degrade Maize Cellulose.

Authors:  Junfeng Li; Siran Wang; Jie Zhao; Zhihao Dong; Tao Shao
Journal:  Front Microbiol       Date:  2022-04-11       Impact factor: 6.064

  3 in total

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