Literature DB >> 34221668

Phasor-based image segmentation: machine learning clustering techniques.

Alex Vallmitjana1, Belén Torrado1, Enrico Gratton1.   

Abstract

The phasor approach is a well-established method for data visualization and image analysis in spectral and lifetime fluorescence microscopy. Nevertheless, it is typically applied in a user-dependent manner by manually selecting regions of interest on the phasor space to find distinct regions in the fluorescence images. In this paper we present our work on using machine learning clustering techniques to establish an unsupervised and automatic method that can be used for identifying populations of fluorescent species in spectral and lifetime imaging. We demonstrate our method using both synthetic data, created by sampling photon arrival times and plotting the distributions on the phasor plot, and real live cells samples, by staining cellular organelles with a selection of commercial probes.
© 2021 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Year:  2021        PMID: 34221668      PMCID: PMC8221971          DOI: 10.1364/BOE.422766

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  24 in total

1.  Polar plot representation for frequency-domain analysis of fluorescence lifetimes.

Authors:  Glen I Redford; Robert M Clegg
Journal:  J Fluoresc       Date:  2005-09       Impact factor: 2.217

2.  The phasor approach to fluorescence lifetime imaging analysis.

Authors:  Michelle A Digman; Valeria R Caiolfa; Moreno Zamai; Enrico Gratton
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

3.  A novel fluorescence lifetime imaging system that optimizes photon efficiency.

Authors:  Ryan A Colyer; Claudia Lee; Enrico Gratton
Journal:  Microsc Res Tech       Date:  2008-03       Impact factor: 2.769

4.  Measuring the effect of a Western diet on liver tissue architecture by FLIM autofluorescence and harmonic generation microscopy.

Authors:  Suman Ranjit; Alexander Dvornikov; Evgenia Dobrinskikh; Xiaoxin Wang; Yuhuan Luo; Moshe Levi; Enrico Gratton
Journal:  Biomed Opt Express       Date:  2017-06-01       Impact factor: 3.732

5.  Reliable cell segmentation based on spectral phasor analysis of hyperspectral stimulated Raman scattering imaging data.

Authors:  Dan Fu; X Sunney Xie
Journal:  Anal Chem       Date:  2014-04-08       Impact factor: 6.986

6.  A fluorescent derivative of ceramide: physical properties and use in studying the Golgi apparatus of animal cells.

Authors:  R E Pagano
Journal:  Methods Cell Biol       Date:  1989       Impact factor: 1.441

Review 7.  Molecular probes for fluorescence lifetime imaging.

Authors:  Pinaki Sarder; Dolonchampa Maji; Samuel Achilefu
Journal:  Bioconjug Chem       Date:  2015-05-22       Impact factor: 4.774

8.  Characterizing fibrosis in UUO mice model using multiparametric analysis of phasor distribution from FLIM images.

Authors:  Suman Ranjit; Alexander Dvornikov; Moshe Levi; Seth Furgeson; Enrico Gratton
Journal:  Biomed Opt Express       Date:  2016-08-17       Impact factor: 3.732

9.  Faster, sharper, more precise: Automated Cluster-FLIM in preclinical testing directly identifies the intracellular fate of theranostics in live cells and tissue.

Authors:  Robert Brodwolf; Pierre Volz-Rakebrand; Johannes Stellmacher; Christopher Wolff; Michael Unbehauen; Rainer Haag; Monika Schäfer-Korting; Christian Zoschke; Ulrike Alexiev
Journal:  Theranostics       Date:  2020-05-15       Impact factor: 11.556

View more
  3 in total

1.  Spatial transcriptomics using combinatorial fluorescence spectral and lifetime encoding, imaging and analysis.

Authors:  Tam Vu; Alexander Vallmitjana; Joshua Gu; Kieu La; Qi Xu; Jesus Flores; Jan Zimak; Jessica Shiu; Linzi Hosohama; Jie Wu; Christopher Douglas; Marian L Waterman; Anand Ganesan; Per Niklas Hedde; Enrico Gratton; Weian Zhao
Journal:  Nat Commun       Date:  2022-01-10       Impact factor: 14.919

Review 2.  Linear Combination Properties of the Phasor Space in Fluorescence Imaging.

Authors:  Belén Torrado; Leonel Malacrida; Suman Ranjit
Journal:  Sensors (Basel)       Date:  2022-01-27       Impact factor: 3.576

3.  Automated Phasor Segmentation of Fluorescence Lifetime Imaging Data for Discriminating Pigments and Binders Used in Artworks.

Authors:  Sara Mattana; Alice Dal Fovo; João Luís Lagarto; Maria Chiara Bossuto; Vladislav Shcheslavskiy; Raffaella Fontana; Riccardo Cicchi
Journal:  Molecules       Date:  2022-02-22       Impact factor: 4.411

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.