Literature DB >> 27699117

Characterizing fibrosis in UUO mice model using multiparametric analysis of phasor distribution from FLIM images.

Suman Ranjit1, Alexander Dvornikov1, Moshe Levi2, Seth Furgeson2, Enrico Gratton1.   

Abstract

Phasor approach to fluorescence lifetime microscopy is used to study development of fibrosis in the unilateral ureteral obstruction model (UUO) of kidney in mice. Traditional phasor analysis has been modified to create a multiparametric analysis scheme that splits the phasor points in four equidistance segments based on the height of peak of the phasor distribution and calculates six parameters including average phasor positions, the shape of each segment, the angle of the distribution and the number of points in each segment. These parameters are used to create a spectrum of twenty four points specific to the phasor distribution of each sample. Comparisons of spectra from diseased and healthy tissues result in quantitative separation and calculation of statistical parameters including AUC values, positive prediction values and sensitivity. This is a new method in the evolving field of analyzing phasor distribution of FLIM data and provides further insights. Additionally, the progression of fibrosis with time is detected using this multiparametric approach to phasor analysis.

Entities:  

Keywords:  (100.0100) Image processing; (170.2520) Fluorescence microscopy; (170.3650) Lifetime-based sensing

Year:  2016        PMID: 27699117      PMCID: PMC5030029          DOI: 10.1364/BOE.7.003519

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  28 in total

1.  The phasor approach to fluorescence lifetime imaging analysis.

Authors:  Michelle A Digman; Valeria R Caiolfa; Moreno Zamai; Enrico Gratton
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

2.  A modified phasor approach for analyzing time-gated fluorescence lifetime images.

Authors:  F Fereidouni; A Esposito; G A Blab; H C Gerritsen
Journal:  J Microsc       Date:  2011-09-20       Impact factor: 1.758

3.  Digital parallel frequency-domain spectroscopy for tissue imaging.

Authors:  Cosimo Arnesano; Ylenia Santoro; Enrico Gratton
Journal:  J Biomed Opt       Date:  2012-09       Impact factor: 3.170

4.  In vivo single-cell detection of metabolic oscillations in stem cells.

Authors:  Chiara Stringari; Hong Wang; Mikhail Geyfman; Viera Crosignani; Vivek Kumar; Joseph S Takahashi; Bogi Andersen; Enrico Gratton
Journal:  Cell Rep       Date:  2014-12-24       Impact factor: 9.423

5.  International variation in the interpretation of renal transplant biopsies: report of the CERTPAP Project.

Authors:  P N Furness; N Taub
Journal:  Kidney Int       Date:  2001-11       Impact factor: 10.612

6.  Deep tissue fluorescence imaging and in vivo biological applications.

Authors:  Viera Crosignani; Alexander Dvornikov; Jose S Aguilar; Chiara Stringari; Robert Edwards; William W Mantulin; Enrico Gratton
Journal:  J Biomed Opt       Date:  2012-11       Impact factor: 3.170

Review 7.  Ureteral obstruction as a model of renal interstitial fibrosis and obstructive nephropathy.

Authors:  Robert L Chevalier; Michael S Forbes; Barbara A Thornhill
Journal:  Kidney Int       Date:  2009-04-01       Impact factor: 10.612

8.  Reproducibility of the Banff classification of renal allograft pathology. Inter- and intraobserver variation.

Authors:  N Marcussen; T S Olsen; H Benediktsson; L Racusen; K Solez
Journal:  Transplantation       Date:  1995-11-27       Impact factor: 4.939

9.  Phasor fluorescence lifetime microscopy of free and protein-bound NADH reveals neural stem cell differentiation potential.

Authors:  Chiara Stringari; Jamison L Nourse; Lisa A Flanagan; Enrico Gratton
Journal:  PLoS One       Date:  2012-11-05       Impact factor: 3.240

10.  Metabolic trajectory of cellular differentiation in small intestine by Phasor Fluorescence Lifetime Microscopy of NADH.

Authors:  Chiara Stringari; Robert A Edwards; Kira T Pate; Marian L Waterman; Peter J Donovan; Enrico Gratton
Journal:  Sci Rep       Date:  2012-08-10       Impact factor: 4.379

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  12 in total

1.  FXR/TGR5 Dual Agonist Prevents Progression of Nephropathy in Diabetes and Obesity.

Authors:  Xiaoxin X Wang; Dong Wang; Yuhuan Luo; Komuraiah Myakala; Evgenia Dobrinskikh; Avi Z Rosenberg; Jonathan Levi; Jeffrey B Kopp; Amanda Field; Ashley Hill; Scott Lucia; Liru Qiu; Tao Jiang; Yingqiong Peng; David Orlicky; Gabriel Garcia; Michal Herman-Edelstein; Vivette D'Agati; Kammi Henriksen; Luciano Adorini; Mark Pruzanski; Cen Xie; Kristopher W Krausz; Frank J Gonzalez; Suman Ranjit; Alexander Dvornikov; Enrico Gratton; Moshe Levi
Journal:  J Am Soc Nephrol       Date:  2017-10-31       Impact factor: 10.121

2.  Label-Free Metabolic Classification of Single Cells in Droplets Using the Phasor Approach to Fluorescence Lifetime Imaging Microscopy.

Authors:  Ning Ma; Gopakumar Kamalakshakurup; Mohammad Aghaamoo; Abraham P Lee; Michelle A Digman
Journal:  Cytometry A       Date:  2018-12-11       Impact factor: 4.355

3.  Measuring the effect of a Western diet on liver tissue architecture by FLIM autofluorescence and harmonic generation microscopy.

Authors:  Suman Ranjit; Alexander Dvornikov; Evgenia Dobrinskikh; Xiaoxin Wang; Yuhuan Luo; Moshe Levi; Enrico Gratton
Journal:  Biomed Opt Express       Date:  2017-06-01       Impact factor: 3.732

4.  Hyperspectral imaging in highly scattering media by the spectral phasor approach using two filters.

Authors:  Alexander Dvornikov; Enrico Gratton
Journal:  Biomed Opt Express       Date:  2018-07-03       Impact factor: 3.732

5.  Phasor-based image segmentation: machine learning clustering techniques.

Authors:  Alex Vallmitjana; Belén Torrado; Enrico Gratton
Journal:  Biomed Opt Express       Date:  2021-05-17       Impact factor: 3.732

6.  Phasor approach to autofluorescence lifetime imaging FLIM can be a quantitative biomarker of chronic renal parenchymal injury.

Authors:  Suman Ranjit; Kammi Henriksen; Alexander Dvornikov; Marco Delsante; Avi Rosenberg; Moshe Levi; Enrico Gratton
Journal:  Kidney Int       Date:  2020-05-28       Impact factor: 10.612

7.  Spatial and temporal resolution of mORC4 fluorescent variants reveals structural requirements for achieving higher order self-association and pronuclei entry.

Authors:  Hieu Nguyen; W Steven Ward; Nicholas G James
Journal:  Methods Appl Fluoresc       Date:  2019-05-16       Impact factor: 3.009

Review 8.  Advances in fluorescence microscopy techniques to study kidney function.

Authors:  Suman Ranjit; Luca Lanzanò; Andrew E Libby; Enrico Gratton; Moshe Levi
Journal:  Nat Rev Nephrol       Date:  2020-09-18       Impact factor: 28.314

9.  Eplerenone Attenuates Fibrosis in the Contralateral Kidney of UUO Rats by Preventing Macrophage-to-Myofibroblast Transition.

Authors:  Yunzhao Xiong; Yi Chang; Juan Hao; Cuijuan Zhang; Fan Yang; Zheng Wang; Yunmeng Liu; Xiangting Wang; Shengyu Mu; Qingyou Xu
Journal:  Front Pharmacol       Date:  2021-02-24       Impact factor: 5.810

10.  Upregulation of allograft inflammatory factor‑1 expression and secretion by macrophages stimulated with aldosterone promotes renal fibroblasts to a profibrotic phenotype.

Authors:  Yushu Li; Xingzhi Wang; Lei Zhang; Xueying Yuan; Jianbing Hao; Jie Ni; Lirong Hao
Journal:  Int J Mol Med       Date:  2018-05-10       Impact factor: 4.101

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