| Literature DB >> 34209305 |
Alexander L Pomadchik1, Alexander S Belov1,2, Ekaterina G Lebed1,2, Irina G Belaya1, Anna V Vologzhanina1, Yan Z Voloshin1,2.
Abstract
Kinetics and thermodynamics of the template synthesis and of the acidic decomposition of the methylboron-cappedEntities:
Keywords: X-ray diffraction; acidic decomposition; cage complexes; clathrochelates; iron complexes; kinetics of complexation; macrocyclic compounds; template synthesis; thermodynamics of complexation
Year: 2021 PMID: 34209305 PMCID: PMC8271458 DOI: 10.3390/molecules26134019
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Most plausible pathway of a formation of the clathrochelate FeNx3(BCH3)2. Adapted from [6].
Scheme 2Preparation of the complex FeOx3(BCH3)2 (5).
Figure 1The solution UV-vis spectrum of the complex FeOx3(BCH3)2 (5) in dichloromethane at its concentration equal to 2.1 × 10−4 mol L−1.
Figure 2Example of a determination of the initial synthesis reaction rate dA/dt for the complex FeOx3(BCH3)2 (5) at [Fe2+] = 2 × 10−5 mol L−1, [H2Ox] = 1.5 × 10−3 mol L−1, [CH3B(OH)2] = 5 × 10−3 mol L−1 and pH = 3.75.
Figure 3Determination of the synthesis reaction order for the complex FeOx3(BCH3)2 (5) with respect to the concentration of Fe2+ ions at [H2Ox] = 1.5 × 10−3 mol L−1, [CH3B(OH)2] = 5 × 10−3 mol L−1 and pH = 3.75.
Figure 4Example of an experimental determination of the synthesis reaction rate constant for the complex FeOx3(BCH3)2 (5) at [Fe2+] = 2 × 10−5 mol L−1, [H2Ox] = 1.5 × 10−3 mol L−1, [CH3B(OH)2] = 5 × 10−3 mol L−1 and pH = 3.75.
Figure 5Determination of an order of the synthesis reaction rate constant for the complex FeOx3(BCH3)2 (5) with respect to the concentration of octoxime at [Fe2+] = 1.5 × 10−5 mol L−1, [CH3B(OH)2] = 5 × 10−3 mol L−1 and pH = 3.3.
Figure 6Plot of log() − 3 log[H2Ox] versus for the complex FeOx3(BCH3)2 (5) at [Fe2+] = 2.5 × 10−5 mol L−1 and [CH3B(OH)2] = 1 × 10−2 mol L−1.
Figure 7Plots of log − 3 log[H2Ox] versus log[CH3B(OH)2] at the different pH values and various concentrations of Fe2+ ions and of octoxime.
Kinetic and thermodynamic parameters of the template synthesis and the acidic decomposition reactions of the methylboron-capped iron(II) tris-octoximate FeOx3(BCH3)2 (5), and those for its tris-nioximate (4) [6] and hydroxy-, phenyl- and n-butylboron-capped tris-octoximate [1] analogs.
| Complex | b log |
|
c
|
| |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| a FeOx3(BCH3)2 | b 5.37 | 4.36 (pH2.38) | 1.86 (pH2.38) | 343 (pH2.38) | 8960 | ||||||
| FeOx3(BOH)2 | b 5.37 | 0.445 | 0.19 | 22 | 424 | 0.12 | 129 | ||||
| FeOx3(BC6H5)2 | 1.2 × 104 | 0.09 | 292 | 240 | 5.0 | 3.5 | |||||
| FeOx3(B | 2.1 × 104 | 0.11 | 147 | 129 | 31.1 | 5.9 | |||||
| FeNx3(BCH3)2 | b 4.94 | 3.2 × 103 |
a This work. b β3 is an earlier obtained [1] stability constant for the corresponding non-macrocyclic tris-dioximate [Fe(H2D)3]2+ measured [1] in aqueous solutions. c K4 = K5−1K6−1.
Scheme 3Plausible pathway of a formation of the clathrochelate FeOx3(BCH3)2 (5).
Figure 8General view of the molecule FeOx3(BCH3)2 (5) in representation of its atoms with thermal ellipsoids (p = 50%).
Figure 9General view of the molecule FeNx3(BCH3)2 (4) in representation of its atoms with thermal ellipsoids (p = 50%).
Main geometrical parameters of the alkylboron-capped iron(II) tris-octoximate molecules and those for initial α-dioxime (octoxime).
| Parameter | a FeOx3(BCH3)2 (5) | FeOx3(B | b FeOx3(BAd)2 [ | H2Ox [ |
|---|---|---|---|---|
| Fe–(Å) | 1.910(2)–1.921(2) | 1.868(11)–1.929(11) | 1.895(2)–1.911(2) | - |
| av. 1.916 | av. 1.895 | av. 1.899 | ||
| B–O (Å) | 1.512(3)–1.526(3) | 1.497(19)–1.510(20) | 1.495(4)–1.515(4) | - |
| av. 1.519 | av. 1.505 | av. 1.502 | ||
| N–O (Å) | 1.387(2)–1.394(2) | 1.363(13)–1.394(10) | 1.366(3)–1.383(3) | 1.409(2)–1.413(4) |
| av. 1.390 | av. 1.375 | av. 1.375 | av. 1.411 | |
| C=N (Å) | 1.315(3)–1.323(2) | 1.28(2)–1.34(2) | 1.289(4)–1.313(4) | 1.291(3)–1.293(7) |
| av. 1.318 | av. 1.314 | av. 1.303 | av. 1.292 | |
| chelate C–C (Å) | 1.460(3)–1.463(3) | 1.439(16)–1.459(17) | 1.440(5)–1.454(5) | 1.492(7) |
| av. 1.461 | av. 1.445 | av. 1.447 | ||
| c N…N (Å) | 2.432(2)–2.436(3) | 2.387(12)–2.412(14) | 2.401(4)–2.408(4) | 2.667(3) |
| av. 2.434 | av. 2.397 | av. 2.405 | ||
| N=C–C=N (°) | av. 6.8 | av. 5.7 | av. 6.2 | 26.6(6) |
| φ (°) | 26.0 | 25.1 | 25.2 | |
| α (°) | 78.8 | 78.4 | 78.6 | |
| h (Å) | 2.34 | 2.31 | 2.31 |
a This work. b “Ad” means an adamantyl residue. c “N…N” means the distance between two nitrogen atoms of the same α-dioximate ligand fragment.
Main geometrical parameters of the alkylboron-capped iron(II) tris-nioximate molecules and those for the initial α-dioxime (nioxime).
| Parameter | a FeNx3(BCH3)2 (4) | FeNx3(B | b FeNx3(BAd)2 [ | H2Nx [ |
|---|---|---|---|---|
| Fe–N (Å) | 1.911(2)–1.918(2) | 1.895(3)–1.923(3) | 1.898(2)–1.906(2) | |
| av. 1.914 | av. 1.911 | av. 1.902 | ||
| B–O (Å) | 1.498(3)–1.513(3) | 1.466(5)–1.532(5) | 1.499(3)–1.506(3) | |
| av. 1.503 | av. 1.504 | av. 1.503 | ||
| N–O (Å) | 1.372(2)–1.379(2) | 1.368(3)–1.386(3) | 1.365(2)–1.374(2) | 1.402(3)–1.410(3) |
| av. 1.376 | av. 1.376 | av. 1.369 | av. 1.406 | |
| C=N (Å) | 1.302(3)–1.314(3) | 1.295(5)–1.325(4) | 1.304(3)–1.308(2) | 1.276(3)–1.280(3) |
| av. 1.308 | av. 1.309 | av. 1.306 | av. 1.278 | |
| C–C (Å) | 1.435(3)–1.446(3) | 1.414(4)–1.441(4) | 1.432(2)–1.439(3) | 1.489(3) |
| av. 1.440 | av. 1.428 | av. 1.436 | ||
| c N…N (Å) | 2.420(2)–2.424(3) | 2.402(3)–2.427(3) | 2.413(3)–2.425(2) | 2.682(3) |
| av. 2.421 | av. 2.414 | av. 2.417 | ||
| N=C–C=N (°) | av. 6.5 | av. 7.6 | av. 6.0 | 26.2(2) |
| φ (°) | 18.9 | 21.1 | 22.9 | |
| α (°) | 78.4 | 78.4 | 79 | |
| h (Å) | 2.37 | 2.35 | 2.34 |
a This work. b “Ad” means an adamantyl residue. c “N…N” means the distance between two nitrogen atoms of the same α-dioximate ligand fragment.
Figure 10Comparison of a geometry of cyclohexane (on top) and cyclooctane (on bottom) alicyclic fragments in the corresponding boron-capped iron(II)-encapsulating clathrochelate molecules and the initial α-dioximes.
Figure 11Superposition of the side (a) and top (b) views of the molecules FeOx3(BCH3)2 (5, shown in red), FeOx3(Bn-C4H9)2 (shown in green) and FeOx3(BAd)2 (shown in blue) used for their comparison. Hydrogen atoms are omitted for clarity. Their main superimposed atoms are Fe1, B1, B2 and six nitrogen atoms as well.
Figure 12Example of a determination of the decomposition reaction rate constant for the clathrochelate FeOx3(BCH3)2 (5) at its concentration 4.6 × 10−5 mol L−1 in 2.6 M solution of sulfuric acid ( = 0.019 mol L−1).
Scheme 4Most plausible pathway of the acidic decomposition of the n-butyl- and phenylboron-capped iron(II) alicyclic tris-α-dioximates. Adapted from [1].
Figure 13Plots of the values for clathrochelates FeOx3(BCH3)2 (5, this work, shown in red, at the concentrations of methylboronic acid equal to 0 (1), 3.06 × 10−2 (2) and 6.38 × 10−2 (3) mol L−1) and FeNx3(BCH3)2 (4, shown in black, at the concentrations of methylboronic acid equal to 0 (4) and 1.53 × 10−1 (5) mol L−1) versus the activity of H+ ions. Adapted from ref. [6].
Figure 14Plots of of the acidic decomposition of clathrochelates FeOx3(BCH3)2 (this work, 5, shown in red) and FeNx3(BCH3)2 (4, shown in black) versus the concentration of methylboronic acid at the activities of H+ ions equal to 7.39 × 10−2 and 3.62 × 10−2 mol L−1, respectively. Adapted from ref. [6].