Literature DB >> 34209077

Covalent Positioning of Single DNA Molecules for Nanopatterning.

Eung-Sam Kim1, Jung Sook Kim2, Nishan Chakrabarty3, Chul-Ho Yun3.   

Abstract

Bottom-up micropatterning or nanopatterning can be viewed as the localization of target molecules to the desired area of a surface. A majority of these processes rely on the physical adsorption of ink-like molecules to the paper-like surface, resulting in unstable immobilization of the target molecules owing to their noncovalent linkage to the surface. Herein, successive single nick-sealing facilitated the covalent immobilization of individual DNA molecules at defined positions on a dendron-coated silicon surface using atomic force microscopy. The covalently-patterned ssDNA was visualized when the streptavidin-coated gold nanoparticles bound to the biotinylated DNA. The successive covalent positioning of the target DNA under ambient conditions may facilitate the bottom-up construction of DNA-based durable nanostructures, nanorobots, or memory system.

Entities:  

Keywords:  DNA ligation; DNA-based nanomachine; atomic force microscopy; covalent bond; dendron-coated surfaces; molecular writing

Year:  2021        PMID: 34209077     DOI: 10.3390/nano11071725

Source DB:  PubMed          Journal:  Nanomaterials (Basel)        ISSN: 2079-4991            Impact factor:   5.076


  18 in total

1.  Manipulation of atoms across a surface at room temperature

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Journal:  Nature       Date:  2000-04-13       Impact factor: 49.962

2.  How strong is a covalent bond?

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Journal:  Science       Date:  1999-03-12       Impact factor: 47.728

3.  Following the DNA ligation of a single duplex using atomic force microscopy.

Authors:  Eung-Sam Kim; Jung Sook Kim; Yoonhee Lee; Kwan Yong Choi; Joon Won Park
Journal:  ACS Nano       Date:  2012-06-15       Impact factor: 15.881

4.  Kinetic characterization of on-chip DNA ligation on dendron-coated surfaces with nanoscaled lateral spacings.

Authors:  Eung-Sam Kim; Namgyu Lee; Joon Won Park; Kwan Yong Choi
Journal:  Nanotechnology       Date:  2013-09-12       Impact factor: 3.874

5.  Enzyme-assisted nanolithography.

Authors:  Leif Riemenschneider; Sven Blank; Manfred Radmacher
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6.  Reading single DNA with DNA polymerase followed by atomic force microscopy.

Authors:  Youngkyu Kim; Eung-Sam Kim; Yoonhee Lee; Joung-Hun Kim; Bong Chu Shim; Seong Moon Cho; Jeong Soo Lee; Joon Won Park
Journal:  J Am Chem Soc       Date:  2014-09-17       Impact factor: 15.419

7.  A cargo-sorting DNA robot.

Authors:  Anupama J Thubagere; Wei Li; Robert F Johnson; Zibo Chen; Shayan Doroudi; Yae Lim Lee; Gregory Izatt; Sarah Wittman; Niranjan Srinivas; Damien Woods; Erik Winfree; Lulu Qian
Journal:  Science       Date:  2017-09-15       Impact factor: 47.728

8.  Dendron arrays for the force-based detection of DNA hybridization events.

Authors:  Yu Jin Jung; Bong Jin Hong; Wenke Zhang; Saul J B Tendler; Philip M Williams; Stephanie Allen; Joon Won Park
Journal:  J Am Chem Soc       Date:  2007-07-11       Impact factor: 15.419

9.  RNAstructure: Web servers for RNA secondary structure prediction and analysis.

Authors:  Stanislav Bellaousov; Jessica S Reuter; Matthew G Seetin; David H Mathews
Journal:  Nucleic Acids Res       Date:  2013-04-24       Impact factor: 16.971

10.  The Evolution of DNA-Templated Synthesis as a Tool for Materials Discovery.

Authors:  Rachel K O'Reilly; Andrew J Turberfield; Thomas R Wilks
Journal:  Acc Chem Res       Date:  2017-09-15       Impact factor: 22.384

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