| Literature DB >> 34202390 |
Yanira Ruiz-Heredia1,2, Alejandra Ortiz-Ruiz1,2, Mehmet K Samur3, Vanesa Garrido1,2, Laura Rufian2, Ricardo Sanchez1,2, Pedro Aguilar-Garrido1, Santiago Barrio1,2, Miguel A Martín4,5, Niccolò Bolli6,7, Yu-Tzu Tai3, Raphaël Szalat3, Mariateresa Fulciniti3, Nikhil Munshi3, Joaquín Martínez-López1,2, María Linares1,2,8, Miguel Gallardo1,2.
Abstract
Many studies over the last 20 years have investigated the role of mitochondrial DNA (mtDNA) alterations in carcinogenesis. However, the status of the mtDNACN in MM and its implication in the pathogenesis of the disease remains unclear. We examined changes in plasma cell mtDNACN across different stages of MM by applying RT-PCR and high-throughput sequencing analysis. We observed a significant increase in the average mtDNACN in myeloma cells compared with healthy plasma cells (157 vs. 40 copies; p = 0.02). We also found an increase in mtDNACN in SMM and newly diagnosed MM (NDMM) paired samples and in consecutive relapses in the same patient. Survival analysis revealed the negative impact of a high mtDNACN in progression-free survival in NDMM (p = 0.005). Additionally, we confirmed the higher expression of mitochondrial biogenesis regulator genes in myeloma cells than in healthy plasma cells and we detected single nucleotide variants in several genes involved in mtDNA replication. Finally, we found that there was molecular similarity between "rapidly-progressing SMM" and MM regarding mtDNACN. Our data provide evidence that malignant transformation of myeloma cells involves the activation of mitochondrial biogenesis, resulting in increased mtDNA levels, and highlights vulnerabilities and potential therapeutic targets in the treatment of MM. Accordingly, mtDNACN tracking might guide clinical decision-making and management of complex entities such as high-risk SMM.Entities:
Keywords: NGS; mitochondria DNA copy number; multiple myeloma; smoldering MM
Year: 2021 PMID: 34202390 PMCID: PMC8268477 DOI: 10.3390/cancers13133189
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Clinical characteristics of patients included in the study (n = 142).
| MGUS ( | SMM ( | NDMM ( | RRMM ( | ||
|---|---|---|---|---|---|
| Median age (range), years | 71 (48–87) | 78.5 (54–87) | 72 (62–85) | 67.5 (38–87) | |
| Sex (%) | Male | 58.8 | 45 | 52.9 | 53.8 |
| Female | 41.2 | 55 | 47.1 | 46.2 | |
| PC BM, average % (range) | 6.8 (2–17) | 23.2 (10–55) | 43.9 (10–84) | 39.2 (4–88) | |
| PPC MFC %, average (range) | 1 (0.1–2.9) | 6.1 (0.98–24) | 11.2 (0.2–30) | 14.8 (0.01–79) | |
| Type of Ig heavy chain (serum) | Non-detected | 5.9 | 0 | 0 | 0 |
| IgG | 52.9 | 60 | 64.7 | 69.2 | |
| IgA | 35.3 | 40 | 23.5 | 15.4 | |
| IgM | 5.9 | 0 | 5.9 | 15.4 | |
| IgD | 0 | 0 | 0 | 0 | |
| Biclonal | 0 | 0 | 0 | 0 | |
| Type of Ig light chain (serum) | Non-detected | 5.9 | 0 | 0 | 3.8 |
| Kappa | 52.9 | 55 | 76.5 | 61.5 | |
| Lambda | 41.2 | 45 | 23.5 | 30.8 | |
| Biclonal | 0 | 0 | 0 | 3.8 | |
| Serum M-spike, ≥3 gr/dL (%) | 0 | 10 | 82.4 | 23.1 | |
| Urine M-spike, detected (%) | 20 | 29.4 | 70.6 | 53.8 | |
| Kappa (%) | ≥19.4 mg/L | 57.1 | 66.7 | 100 | 66.7 |
| Lambda (%) | ≥26.3 mg/L | 50 | 41.7 | 33.3 | 33.3 |
| Free kappa/lambda ratio (%) | <0.26 mg/L | 14.3 | 23.1 | 0 | 26.7 |
| ≥0.26 < 1.65 mg/L | 42.9 | 38.5 | 22.2 | 6.7 | |
| ≥1.65 mg/L | 42.9 | 38.5 | 77.8 | 66.7 | |
| Creatinine (%) | ≥1.3 mg/dL | 29.4 | 25 | 47.1 | 19.2 |
| Serum calcium (%) | ≥11 mg/dL | 0 | 0 | 11.1 | 11.5 |
| LDH (%) | ≥225 U/I | 5.9 | 14 | 11.8 | 38.5 |
| Albúmina (%) | ≤3 g/dL | 0 | 5 | 11.8 | 3.8 |
| Immunoparesis, yes (%) | 18.8 | 20 | 23.5 | 80.8 | |
| Refractory, yes (%) | NA | NA | 5.9 | 40 | |
| Type of prior treatment (%) | With PI | NA | 0 | 5.9 | 42.3 |
| Without PI | NA | 100 | 94.1 | 57.7 | |
| Type of following treatment (%) | With PI | NA | 25 | 88.2 | 42.3 |
| Without PI | NA | 75 | 11.8 | 57.7 | |
| Best response categories * (%) | VGPR | 0 | 0 | 17.6 | 0 |
| PR | 0 | 30 | 58.8 | 34.6 | |
| CR | 0 | 0 | 23.5 | 19.2 | |
| CR MRD+ | 0 | 0 | 0 | 0 | |
| CR MRD- | 0 | 0 | 0 | 0 | |
| SD | 0 | 5 | 0 | 34.6 | |
| NA | 100 | 65 | 0 | 11.5 | |
| Performed analysis (methods) | Samples, | 26 | 39 | 107 | 81 |
| WGS | 0 | 10 | 10 | 0 | |
| WES | 0 | 0 | 0 | 44 | |
| mtDNA CN | 17 | 20 | 79 | 26 | |
| Gene expression | 9 | 9 | 18 | 11 |
Percentage frequencies of clinical parameters from patients. Abbreviations: BM, bone marrow; CR, complete response; Ig, immunoglobulin; LDH, lactate dehydrogenase; NDMM, newly-diagnosed multiple myeloma; MFC: multiparametric flow cytometry; MGUS, monoclonal gammopathy of uncertain significance; MRD-, minimal residual disease negative; MRD+, minimal residual disease positive; mtDNACN, mitochondrial DNA copy number; NA, not applicable; PC, plasma cell; PI, proteasome inhibitors; PPC: polyclonal plasma cell; PR, partial response; RRMM, relapse multiple myeloma; SMM, smoldering multiple myeloma; SD, stable disease; VGPR, very good partial response; WES, whole-exome sequencing; WGS, whole-genome sequencing. * Objective response was assessed at the start of each cycle and confirmed by the physician using IMWG criteria. a MM patients comprised newly-diagnosed and follow-up patients.
Figure 1Primary multiple myeloma cells exhibit differences in mitochondrial DNA copy number, which correlates with survival. (A) Box-plots of mtDNACN values estimated from next-generation sequencing data (n = 142). MM/ healthy donors mtDNACN fold-change (153 vs. 40 copies), p = 0.0001 (ANOVA Kruskal–Wallis test). Average mtDNACN of MM cells from patients with NDMM and healthy plasma cells (157 vs. 40 copies), p = 0.02 (Mann–Whitney test). Data are presented as mean values ± SD. (B) Kaplan–Meier curves of progression-free survival (PFS) in patients with MM. The red curve corresponds to patients with >400 mtDNA copies (n = 11). The blue curve corresponds to patients with <400 mtDNA copies (n = 58) (p = 0.005).
Mutations responsible for mtDNA replication in a small subset of patients (n = 12).
| Coordinates | Codons | Protein | Substitution | Region | dbSNP ID | SNP Type | Mutated Sample | Prediction |
|---|---|---|---|---|---|---|---|---|
| 15,89864181,1,T/C | AGT-gGT | POLG | S933G | EXON CDS | Novel | Nonsynonymous | SMM | DAMAGING |
| 15,89869943,1,C/A | GAG-tAG | POLG | E538X | EXON CDS | rs138413938:A | Nonsynonymous | RRMM | Damaging due to stop |
| 17,62492888,1,C/G | GAG-cAG | POLG2 | E67Q | EXON CDS | Novel | Nonsynonymous | RRMM | TOLERATED |
Figure 2Mitochondrial DNA copy number increases with the progression of the disease. (A) mtDNACN calculated from WGS data from paired samples of 10 patients with SMM evolving to MM. Green bars correspond to patients with increased mtDNACN and red bars correspond to decreased mtDNACN, p < 0.05 (Mann–Whitney). (B) Changes in consecutive relapse patients were assessed from WES data of 21 patients (n = 44 samples), p < 0.05 (Kruskal–Wallis). Red bars correspond to the increase between the first and second or second and third relapses, whereas blue bars correspond to a decrease.
Figure 3Mitochondrial gene expression is enhanced in late stage multiple myeloma. (A) Fold-change in gene expression of TUFM and TFAM relative to GUSB in patients (MGUS n = 9; SMM n = 9; NDMM n = 18; RRMM n = 11). Data are presented as mean values ± SEM of technical triplicates. (B) High level of mitochondria-related genes identified by RNAseq analysis from the CoMMpass study (IA14); TUFM and COXII overexpression associate with shorter progression-free survival. (C,D) Heatmaps of canEvolve database analysis. (C) Gene-set enrichment analysis of the mitochondrial respiratory chain pathway; normal vs. NDMM, normal vs. RRMM. D. Gene-set enrichment analysis of the cytochrome c oxidase activity pathway; normal vs. NDMM, normal vs. RRMM. * p < 0.05.