| Literature DB >> 34202348 |
Deepak Kala1, Tarun Kumar Sharma2, Shagun Gupta3, Vivek Verma3, Atul Thakur1, Ankur Kaushal1, Alex V Trukhanov4,5,6, Sergei V Trukhanov4,5,6.
Abstract
The unique structural and electrochemical properties of graphene oxide (Entities:
Keywords: DNA sensor; electrochemical; htrA gene; screen printed paper electrode; scrub typhus
Mesh:
Substances:
Year: 2021 PMID: 34202348 PMCID: PMC8271629 DOI: 10.3390/s21134366
Source DB: PubMed Journal: Sensors (Basel) ISSN: 1424-8220 Impact factor: 3.576
Scheme 1Schematic representation of SPPE/GO/ssDNAprobe/BSA fabrication process with assay protocol for detection of O. tsutsugamushi.
Figure 1(A–C) Characterization of graphene oxide using UV-Vis (A), FTIR (B), and XRD (C). The UV-Vis spectra were obtained in wavelengths of 200 to 800 nm, and the FTIR spectra in a frequency range of 500 to 4000 cm−1.
Figure 2FE-SEM images of (a) bare screen-printed paper electrode (SPPE), (b) SPPE modified with graphene oxide (SPPE/GO), (c) 5′NH2 ssDNAprobe modified SPPE/GO (SPPE/GO/ssDNAprobe).
Figure 3CV of (a) SPPE, (b) SPPE/GO, (c) SPPE/GO/ssDNAprobe, (d) SPPE/GO/ssDNAprobe/BSA. The readings were recorded using 2.5 mM [Fe(CN)6]3−/4− prepared in PBS buffer, pH 7.2; scan rate 30 mV/s.
Figure 4EIS spectra of (a) SPPE, (b) SPPE/GO, (c) SPPE/GO/ssDNAprobe, (d) SPPE/GO/ssDNAprobe/BSA, (e) after hybridization with ssGDNA of O. tsutsugamushi. The readings were recorded using 2.5 mM [Fe(CN)6]3−/4− prepared in PBS buffer, pH 7.2; frequency range of 0.1 Hz to 105 Hz with the Edc = 0.15 V and Eac = 0.006 V.
Figure 5DPVs obtained after hybridization with different concentrations of O. tsutsugamushi GDNA ranging from 0.05 × 102 pg/µL to 5 × 103 pg/µL using 1 mM methylene blue (prepared in PBS buffer, pH 7.2) as a hybridization indicator and 2.5 mM [Fe(CN)6]3−/4− as a redox probe; scan rate 30 mV/s. The inset shows the standard calibration curve obtained by plotting Ip vs. concentrations of DNA and used for calculation of sensitivity and LOD.
Figure 6Selectivity of SPPE/GO/ssDNAprobe/BSA for the detection of O. tsutsugamushi. The curve a shows the DPV of SPPE/GO/ssDNAprobe/BSA, and curves b to f show DPVs of K. pneumoniae, L. interrogans, Human GDNA (H-GDNA), TE buffer without GDNA, and O. tsutsugamushi, respectively.
Nucleotide sequences (cDNA and mismatch bases) used in selectivity.
| DNA Sample | Mismatch Base Sequences |
|---|---|
| cDNA | 5′ACCCCAGAACCTAAGAACACT 3′ |
| 1 base mismatch | 5′A |
| 2 base mismatch | 5′ A |
| 3 base mismatch | 5′ A |
| 4 base mismatch | 5′ |
| Multiple base mismatch | 5′ |
Figure 7Specificity of SPPE/GO/ssDNAprobe/BSA for detection of O. tsutsugamushi.
Figure 8Stability of SPPE/GO/ssDNAprobe/BSA response for detection of O. tsutsugamushi.