Literature DB >> 34198314

Multi-modal image sharpening in fourier transform infrared (FTIR) microscopy.

Rupali Mankar1, Chalapathi Charan Gajjela1, Farideh Foroozandeh Shahraki1, Saurabh Prasad1, David Mayerich1, Rohith Reddy1.   

Abstract

Mid-infrared Spectroscopic Imaging (MIRSI) provides spatially-resolved molecular specificity by measuring wavelength-dependent mid-infrared absorbance. Infrared microscopes use large numerical aperture objectives to obtain high-resolution images of heterogeneous samples. However, the optical resolution is fundamentally diffraction-limited, and therefore wavelength-dependent. This significantly limits resolution in infrared microscopy, which relies on long wavelengths (2.5 μm to 12.5 μm) for molecular specificity. The resolution is particularly restrictive in biomedical and materials applications, where molecular information is encoded in the fingerprint region (6 μm to 12 μm), limiting the maximum resolving power to between 3 μm and 6 μm. We present an unsupervised curvelet-based image fusion method that overcomes limitations in spatial resolution by augmenting infrared images with label-free visible microscopy. We demonstrate the effectiveness of this approach by fusing images of breast and ovarian tumor biopsies acquired using both infrared and dark-field microscopy. The proposed fusion algorithm generates a hyperspectral dataset that has both high spatial resolution and good molecular contrast. We validate this technique using multiple standard approaches and through comparisons to super-resolved experimentally measured photothermal spectroscopic images. We also propose a novel comparison method based on tissue classification accuracy.

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Year:  2021        PMID: 34198314      PMCID: PMC8903170          DOI: 10.1039/d1an00103e

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   5.227


  21 in total

1.  Second harmonic generation microscopy for quantitative analysis of collagen fibrillar structure.

Authors:  Xiyi Chen; Oleg Nadiarynkh; Sergey Plotnikov; Paul J Campagnola
Journal:  Nat Protoc       Date:  2012-03-08       Impact factor: 13.491

2.  Infrared spectroscopic imaging for histopathologic recognition.

Authors:  Daniel C Fernandez; Rohit Bhargava; Stephen M Hewitt; Ira W Levin
Journal:  Nat Biotechnol       Date:  2005-03-27       Impact factor: 54.908

3.  Selecting optimal features from Fourier transform infrared spectroscopy for discrete-frequency imaging.

Authors:  Rupali Mankar; Michael J Walsh; Rohit Bhargava; Saurabh Prasad; David Mayerich
Journal:  Analyst       Date:  2018-02-26       Impact factor: 4.616

4.  Development of photothermal FTIR microspectroscopy as a novel means of spatially identifying amorphous and crystalline salbutamol sulfate on composite surfaces.

Authors:  Louise C Grisedale; Jonathan G Moffat; Matthew J Jamieson; Peter S Belton; Susan A Barker; Duncan Q M Craig
Journal:  Mol Pharm       Date:  2013-04-10       Impact factor: 4.939

5.  High-resolution Fourier-transform infrared chemical imaging with multiple synchrotron beams.

Authors:  Michael J Nasse; Michael J Walsh; Eric C Mattson; Ruben Reininger; André Kajdacsy-Balla; Virgilia Macias; Rohit Bhargava; Carol J Hirschmugl
Journal:  Nat Methods       Date:  2011-03-20       Impact factor: 28.547

6.  Diagnosis of tumors during tissue-conserving surgery with integrated autofluorescence and Raman scattering microscopy.

Authors:  Kenny Kong; Christopher J Rowlands; Sandeep Varma; William Perkins; Iain H Leach; Alexey A Koloydenko; Hywel C Williams; Ioan Notingher
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-03       Impact factor: 11.205

7.  Multiresolution analysis using wavelet, ridgelet, and curvelet transforms for medical image segmentation.

Authors:  Shadi Alzubi; Naveed Islam; Maysam Abbod
Journal:  Int J Biomed Imaging       Date:  2011-09-12

8.  High definition infrared spectroscopic imaging for lymph node histopathology.

Authors:  L Suzanne Leslie; Tomasz P Wrobel; David Mayerich; Snehal Bindra; Rajyasree Emmadi; Rohit Bhargava
Journal:  PLoS One       Date:  2015-06-03       Impact factor: 3.240

9.  Using Fourier transform IR spectroscopy to analyze biological materials.

Authors:  Matthew J Baker; Júlio Trevisan; Paul Bassan; Rohit Bhargava; Holly J Butler; Konrad M Dorling; Peter R Fielden; Simon W Fogarty; Nigel J Fullwood; Kelly A Heys; Caryn Hughes; Peter Lasch; Pierre L Martin-Hirsch; Blessing Obinaju; Ganesh D Sockalingum; Josep Sulé-Suso; Rebecca J Strong; Michael J Walsh; Bayden R Wood; Peter Gardner; Francis L Martin
Journal:  Nat Protoc       Date:  2014-07-03       Impact factor: 13.491

10.  FTIR-based spectroscopic analysis in the identification of clinically aggressive prostate cancer.

Authors:  M J Baker; E Gazi; M D Brown; J H Shanks; P Gardner; N W Clarke
Journal:  Br J Cancer       Date:  2008-11-04       Impact factor: 7.640

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