Literature DB >> 34194912

High-density information storage and random access scheme using synthetic DNA.

Shufang Zhang1, Jianjun Wu1, Beibei Huang1, Yuhong Liu2.   

Abstract

The high-storage density, long-life cycle, and low-energy consumption of DNA molecules make it the future of next-generation storage technology. However, DNA storage has the disadvantages of high-synthesis cost and low-random access efficiency. A high-density DNA-coding scheme can effectively reduce the cost of DNA synthesis. This paper first proposes a DNA-mapping method based on codebook and a random access method for DNA information based on encoded content. The mapping method satisfies the two biological constraints of homopolymer length and GC content. The random access method can efficiently and selectively read specific files in the DNA pool. To increase storage density, convolutional neural networks are combined with mapping methods to generate base sequences. In the experiments, our method was compared with the results of existing DNA information storage methods, which showed that the proposed scheme has better information storage density. © King Abdulaziz City for Science and Technology 2021.

Entities:  

Keywords:  DNA information storage; DNA molecules; High density; Synthetic DNA

Year:  2021        PMID: 34194912      PMCID: PMC8197696          DOI: 10.1007/s13205-021-02882-w

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.893


  9 in total

1.  DNA Fountain enables a robust and efficient storage architecture.

Authors:  Yaniv Erlich; Dina Zielinski
Journal:  Science       Date:  2017-03-03       Impact factor: 47.728

2.  Random access in large-scale DNA data storage.

Authors:  Lee Organick; Siena Dumas Ang; Yuan-Jyue Chen; Randolph Lopez; Sergey Yekhanin; Konstantin Makarychev; Miklos Z Racz; Govinda Kamath; Parikshit Gopalan; Bichlien Nguyen; Christopher N Takahashi; Sharon Newman; Hsing-Yeh Parker; Cyrus Rashtchian; Kendall Stewart; Gagan Gupta; Robert Carlson; John Mulligan; Douglas Carmean; Georg Seelig; Luis Ceze; Karin Strauss
Journal:  Nat Biotechnol       Date:  2018-02-19       Impact factor: 54.908

3.  A high storage density strategy for digital information based on synthetic DNA.

Authors:  Shufang Zhang; Beibei Huang; Xiangming Song; Tao Zhang; Hanjie Wang; Yuhong Liu
Journal:  3 Biotech       Date:  2019-08-24       Impact factor: 2.406

4.  Data storage in DNA with fewer synthesis cycles using composite DNA letters.

Authors:  Leon Anavy; Inbal Vaknin; Orna Atar; Roee Amit; Zohar Yakhini
Journal:  Nat Biotechnol       Date:  2019-09-09       Impact factor: 54.908

Review 5.  Molecular digital data storage using DNA.

Authors:  Luis Ceze; Jeff Nivala; Karin Strauss
Journal:  Nat Rev Genet       Date:  2019-08       Impact factor: 53.242

6.  A Rewritable, Random-Access DNA-Based Storage System.

Authors:  S M Hossein Tabatabaei Yazdi; Yongbo Yuan; Jian Ma; Huimin Zhao; Olgica Milenkovic
Journal:  Sci Rep       Date:  2015-09-18       Impact factor: 4.379

7.  CRISPR-Cas encoding of a digital movie into the genomes of a population of living bacteria.

Authors:  Seth L Shipman; Jeff Nivala; Jeffrey D Macklis; George M Church
Journal:  Nature       Date:  2017-07-12       Impact factor: 49.962

8.  High information capacity DNA-based data storage with augmented encoding characters using degenerate bases.

Authors:  Yeongjae Choi; Taehoon Ryu; Amos C Lee; Hansol Choi; Hansaem Lee; Jaejun Park; Suk-Heung Song; Seojoo Kim; Hyeli Kim; Wook Park; Sunghoon Kwon
Journal:  Sci Rep       Date:  2019-04-29       Impact factor: 4.379

9.  A highly parallel strategy for storage of digital information in living cells.

Authors:  Azat Akhmetov; Andrew D Ellington; Edward M Marcotte
Journal:  BMC Biotechnol       Date:  2018-10-17       Impact factor: 2.563

  9 in total

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