Literature DB >> 34193973

Integrative omics of schizophrenia: from genetic determinants to clinical classification and risk prediction.

Fanglin Guan1, Tong Ni1, Weili Zhu2, L Keoki Williams3, Long-Biao Cui4, Ming Li5, Justin Tubbs6,7, Pak-Chung Sham8,9,10, Hongsheng Gui11,12.   

Abstract

Schizophrenia (SCZ) is a debilitating neuropsychiatric disorder with high heritability and complex inheritance. In the past decade, successful identification of numerous susceptibility loci has provided useful insights into the molecular etiology of SCZ. However, applications of these findings to clinical classification and diagnosis, risk prediction, or intervention for SCZ have been limited, and elucidating the underlying genomic and molecular mechanisms of SCZ is still challenging. More recently, multiple Omics technologies - genomics, transcriptomics, epigenomics, proteomics, metabolomics, connectomics, and gut microbiomics - have all been applied to examine different aspects of SCZ pathogenesis. Integration of multi-Omics data has thus emerged as an approach to provide a more comprehensive view of biological complexity, which is vital to enable translation into assessments and interventions of clinical benefit to individuals with SCZ. In this review, we provide a broad survey of the single-omics studies of SCZ, summarize the advantages and challenges of different Omics technologies, and then focus on studies in which multiple omics data are integrated to unravel the complex pathophysiology of SCZ. We believe that integration of multi-Omics technologies would provide a roadmap to create a more comprehensive picture of interactions involved in the complex pathogenesis of SCZ, constitute a rich resource for elucidating the potential molecular mechanisms of the illness, and eventually improve clinical assessments and interventions of SCZ to address clinical translational questions from bench to bedside.
© 2021. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2021        PMID: 34193973     DOI: 10.1038/s41380-021-01201-2

Source DB:  PubMed          Journal:  Mol Psychiatry        ISSN: 1359-4184            Impact factor:   15.992


  160 in total

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Authors:  Christian Rinke; Patrick Schwientek; Alexander Sczyrba; Natalia N Ivanova; Iain J Anderson; Jan-Fang Cheng; Aaron Darling; Stephanie Malfatti; Brandon K Swan; Esther A Gies; Jeremy A Dodsworth; Brian P Hedlund; George Tsiamis; Stefan M Sievert; Wen-Tso Liu; Jonathan A Eisen; Steven J Hallam; Nikos C Kyrpides; Ramunas Stepanauskas; Edward M Rubin; Philip Hugenholtz; Tanja Woyke
Journal:  Nature       Date:  2013-07-14       Impact factor: 49.962

Review 2.  The genomics of schizophrenia: Shortcomings and solutions.

Authors:  Chuanjun Zhuo; Weihong Hou; Gongying Li; Fuqiang Mao; Shen Li; Xiaodong Lin; Deguo Jiang; Yong Xu; Hongjun Tian; Wenqiang Wang; Langlang Cheng
Journal:  Prog Neuropsychopharmacol Biol Psychiatry       Date:  2019-03-20       Impact factor: 5.067

3.  Schizophrenia as a complex trait: evidence from a meta-analysis of twin studies.

Authors:  Patrick F Sullivan; Kenneth S Kendler; Michael C Neale
Journal:  Arch Gen Psychiatry       Date:  2003-12

4.  Comparative genetic architectures of schizophrenia in East Asian and European populations.

Authors:  Max Lam; Chia-Yen Chen; Zhiqiang Li; Alicia R Martin; Julien Bryois; Xixian Ma; Helena Gaspar; Masashi Ikeda; Beben Benyamin; Brielin C Brown; Ruize Liu; Wei Zhou; Lili Guan; Yoichiro Kamatani; Sung-Wan Kim; Michiaki Kubo; Agung A A A Kusumawardhani; Chih-Min Liu; Hong Ma; Sathish Periyasamy; Atsushi Takahashi; Zhida Xu; Hao Yu; Feng Zhu; Wei J Chen; Stephen Faraone; Stephen J Glatt; Lin He; Steven E Hyman; Hai-Gwo Hwu; Steven A McCarroll; Benjamin M Neale; Pamela Sklar; Dieter B Wildenauer; Xin Yu; Dai Zhang; Bryan J Mowry; Jimmy Lee; Peter Holmans; Shuhua Xu; Patrick F Sullivan; Stephan Ripke; Michael C O'Donovan; Mark J Daly; Shengying Qin; Pak Sham; Nakao Iwata; Kyung S Hong; Sibylle G Schwab; Weihua Yue; Ming Tsuang; Jianjun Liu; Xiancang Ma; René S Kahn; Yongyong Shi; Hailiang Huang
Journal:  Nat Genet       Date:  2019-11-18       Impact factor: 38.330

Review 5.  Schizophrenia: a concise overview of incidence, prevalence, and mortality.

Authors:  John McGrath; Sukanta Saha; David Chant; Joy Welham
Journal:  Epidemiol Rev       Date:  2008-05-14       Impact factor: 6.222

6.  Omics phenotyping in heart failure: the next frontier.

Authors:  Antoni Bayes-Genis; Peter P Liu; David E Lanfear; Rudolf A de Boer; Arantxa González; Thomas Thum; Michele Emdin; James L Januzzi
Journal:  Eur Heart J       Date:  2020-09-21       Impact factor: 29.983

Review 7.  Psychiatric Genomics: An Update and an Agenda.

Authors:  Patrick F Sullivan; Arpana Agrawal; Cynthia M Bulik; Ole A Andreassen; Anders D Børglum; Gerome Breen; Sven Cichon; Howard J Edenberg; Stephen V Faraone; Joel Gelernter; Carol A Mathews; Caroline M Nievergelt; Jordan W Smoller; Michael C O'Donovan
Journal:  Am J Psychiatry       Date:  2017-10-03       Impact factor: 18.112

8.  Schizophrenia-An Overview.

Authors:  Robert A McCutcheon; Tiago Reis Marques; Oliver D Howes
Journal:  JAMA Psychiatry       Date:  2020-02-01       Impact factor: 21.596

Review 9.  A road map for understanding molecular and genetic determinants of osteoporosis.

Authors:  Tie-Lin Yang; Hui Shen; Anqi Liu; Shan-Shan Dong; Lei Zhang; Fei-Yan Deng; Qi Zhao; Hong-Wen Deng
Journal:  Nat Rev Endocrinol       Date:  2019-12-02       Impact factor: 43.330

10.  Schizophrenia risk from complex variation of complement component 4.

Authors:  Aswin Sekar; Allison R Bialas; Heather de Rivera; Avery Davis; Timothy R Hammond; Nolan Kamitaki; Katherine Tooley; Jessy Presumey; Matthew Baum; Vanessa Van Doren; Giulio Genovese; Samuel A Rose; Robert E Handsaker; Mark J Daly; Michael C Carroll; Beth Stevens; Steven A McCarroll
Journal:  Nature       Date:  2016-01-27       Impact factor: 49.962

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  7 in total

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Authors:  Jacopo Sapienza; Marta Bosia; Marco Spangaro; Francesca Martini; Giulia Agostoni; Federica Cuoco; Federica Cocchi; Roberto Cavallaro
Journal:  Mol Psychiatry       Date:  2022-08-05       Impact factor: 13.437

2.  Exploring Brain Structural and Functional Biomarkers in Schizophrenia via Brain-Network-Constrained Multi-View SCCA.

Authors:  Peilun Song; Yaping Wang; Xiuxia Yuan; Shuying Wang; Xueqin Song
Journal:  Front Neurosci       Date:  2022-06-20       Impact factor: 5.152

Review 3.  Endosomal trafficking in schizophrenia.

Authors:  Melissa Plooster; Patrick Brennwald; Stephanie L Gupton
Journal:  Curr Opin Neurobiol       Date:  2022-04-08       Impact factor: 7.070

Review 4.  Bringing machine learning to research on intellectual and developmental disabilities: taking inspiration from neurological diseases.

Authors:  Chirag Gupta; Pramod Chandrashekar; Ting Jin; Chenfeng He; Saniya Khullar; Qiang Chang; Daifeng Wang
Journal:  J Neurodev Disord       Date:  2022-05-02       Impact factor: 4.074

5.  Expression of the GZMB Gene Polymorphism, SNP rs8192917, in 990 Han Chinese Patients with Postoperative Keloids.

Authors:  Xiulin Wen; Huicong Du; Xiaoyan Hao; Jingrong Wang; Yuan Guo
Journal:  Med Sci Monit       Date:  2022-06-23

6.  Using expression quantitative trait loci data and graph-embedded neural networks to uncover genotype-phenotype interactions.

Authors:  Xinpeng Guo; Jinyu Han; Yafei Song; Zhilei Yin; Shuaichen Liu; Xuequn Shang
Journal:  Front Genet       Date:  2022-08-15       Impact factor: 4.772

7.  Common variants in GNL3 gene contributed the susceptibility of hand osteoarthritis in Han Chinese population.

Authors:  Xi Wang; Lin Xiao; Zhiyuan Wang; Liqiang Zhi; Qiang Li
Journal:  Sci Rep       Date:  2022-09-27       Impact factor: 4.996

  7 in total

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