Literature DB >> 34190610

Forty Years of Oxalobacter formigenes, a Gutsy Oxalate-Degrading Specialist.

Steven L Daniel1, Luke Moradi2, Henry Paiste2, Kyle D Wood3, Dean G Assimos3, Ross P Holmes3, Lama Nazzal4, Marguerite Hatch5, John Knight3.   

Abstract

Oxalobacter formigenes, a unique anaerobic bacterium that relies solely on oxalate for growth, is a key oxalate-degrading bacterium in the mammalian intestinal tract. Degradation of oxalate in the gut by O. formigenes plays a critical role in preventing renal toxicity in animals that feed on oxalate-rich plants. The role of O. formigenes in reducing the risk of calcium oxalate kidney stone disease and oxalate nephropathy in humans is less clear, in part due to difficulties in culturing this organism and the lack of studies which have utilized diets in which the oxalate content is controlled. Herein, we review the literature on the 40th anniversary of the discovery of O. formigenes, with a focus on its biology, its role in gut oxalate metabolism and calcium oxalate kidney stone disease, and potential areas of future research. Results from ongoing clinical trials utilizing O. formigenes in healthy volunteers and in patients with primary hyperoxaluria type 1 (PH1), a rare but severe form of calcium oxalate kidney stone disease, are also discussed. Information has been consolidated on O. formigenes strains and best practices to culture this bacterium, which should serve as a good resource for researchers.

Entities:  

Keywords:  Oxalobacter formigenes; culture methods; gut microbiome; kidney stone disease; oxalate degradation; probiotics

Mesh:

Substances:

Year:  2021        PMID: 34190610      PMCID: PMC8388816          DOI: 10.1128/AEM.00544-21

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  98 in total

1.  Prospects for inferring very large phylogenies by using the neighbor-joining method.

Authors:  Koichiro Tamura; Masatoshi Nei; Sudhir Kumar
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-16       Impact factor: 11.205

2.  Oxalobacter formigenes-Derived Bioactive Factors Stimulate Oxalate Transport by Intestinal Epithelial Cells.

Authors:  Donna Arvans; Yong-Chul Jung; Dionysios Antonopoulos; Jason Koval; Ignacio Granja; Mohamed Bashir; Eltayeb Karrar; Jayanta Roy-Chowdhury; Mark Musch; John Asplin; Eugene Chang; Hatim Hassan
Journal:  J Am Soc Nephrol       Date:  2016-10-13       Impact factor: 10.121

3.  COG database update: focus on microbial diversity, model organisms, and widespread pathogens.

Authors:  Michael Y Galperin; Yuri I Wolf; Kira S Makarova; Roberto Vera Alvarez; David Landsman; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2020-11-09       Impact factor: 16.971

4.  The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.

Authors:  I-Min A Chen; Ken Chu; Krishnaveni Palaniappan; Anna Ratner; Jinghua Huang; Marcel Huntemann; Patrick Hajek; Stephan Ritter; Neha Varghese; Rekha Seshadri; Simon Roux; Tanja Woyke; Emiley A Eloe-Fadrosh; Natalia N Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

5.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

6.  Changes in ruminal oxalate degradation rates associated with adaptation to oxalate ingestion.

Authors:  M J Allison; E T Littledike; L F James
Journal:  J Anim Sci       Date:  1977-11       Impact factor: 3.159

7.  Effect of antibiotics on Oxalobacter formigenes colonization of human gastrointestinal tract.

Authors:  R D Mittal; R Kumar; H K Bid; B Mittal
Journal:  J Endourol       Date:  2005 Jan-Feb       Impact factor: 2.942

8.  DNA sequencing and expression of the formyl coenzyme A transferase gene, frc, from Oxalobacter formigenes.

Authors:  H Sidhu; S D Ogden; H Y Lung; B G Luttge; A L Baetz; A B Peck
Journal:  J Bacteriol       Date:  1997-05       Impact factor: 3.490

9.  Absence of Oxalobacter formigenes in cystic fibrosis patients: a risk factor for hyperoxaluria.

Authors:  H Sidhu; B Hoppe; A Hesse; K Tenbrock; S Brömme; E Rietschel; A B Peck
Journal:  Lancet       Date:  1998-09-26       Impact factor: 79.321

10.  Comparative prevalence of Oxalobacter formigenes in three human populations.

Authors:  Amanda PeBenito; Lama Nazzal; Chan Wang; Huilin Li; Melanie Jay; Oscar Noya-Alarcon; Monica Contreras; Orlana Lander; Jeff Leach; Maria Gloria Dominguez-Bello; Martin J Blaser
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379

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  2 in total

Review 1.  Postbiotics and Kidney Disease.

Authors:  Chiara Favero; Laura Giordano; Silvia Maria Mihaila; Rosalinde Masereeuw; Alberto Ortiz; Maria Dolores Sanchez-Niño
Journal:  Toxins (Basel)       Date:  2022-09-06       Impact factor: 5.075

Review 2.  Probiotics in the Prevention of the Calcium Oxalate Urolithiasis.

Authors:  Paulina Wigner; Michał Bijak; Joanna Saluk-Bijak
Journal:  Cells       Date:  2022-01-14       Impact factor: 6.600

  2 in total

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