| Literature DB >> 34188115 |
Sandip Varkey George1, Yoram K Kunkels2, Sanne Booij2,3,4, Marieke Wichers2.
Abstract
While the negative association between physical activity and depression has been well established, it is unclear what precise characteristics of physical activity patterns explain this association. Complexity measures may identify previously unexplored aspects of objectively measured activity patterns, such as the extent to which individuals show repetitive periods of physical activity and the diversity in durations of such repetitive activity patterns. We compared the complexity levels of actigraphy data gathered over 4 weeks ([Formula: see text] data points each) for every individual, from non-depressed ([Formula: see text]) and depressed ([Formula: see text]) groups using recurrence plots. Significantly lower levels of complexity were detected in the actigraphy data from the depressed group as compared to non-depressed controls, both in terms of lower mean durations of periods of recurrent physical activity and less diversity in the duration of these periods. Further, diagnosis of depression was not significantly associated with mean activity levels or measures of circadian rhythm stability, and predicted depression status better than these.Entities:
Mesh:
Year: 2021 PMID: 34188115 PMCID: PMC8241993 DOI: 10.1038/s41598-021-92890-w
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Schematic describing the construction of a recurrence plot. The upper panel shows the series of observations vs time. A region centered on the first data point, with width is shaded in blue. The lower panel shows the corresponding recurrence plot. The elements of the recurrence plot corresponding to the first point are shaded in blue, in the lower panel. When a point falls within the blue rectangle in the upper panel, it is shown as a black point in the lower panel. This analysis is repeated for every point in the time series resulting in the complete recurrence plot. The x and y axes of the recurrence plot represent the time of observation (x axis of the upper panel). Hence, when an observation at time and at time are within distance of each other, the point is marked in black in the recurrence plot.
Figure 2Flowchart indicating the analysis procedure, described in this paper, to extract recurrence plot measures from actigraphy data.
Definitions and interpretations in the context of activity data, for various recurrence plot quantifiers that are used in this work.
| Quantifier | Calculation | Definition | Interpretation |
|---|---|---|---|
| Ratio of diagonal structures to total recurrence points. | Level of deterministic activity in the data. | Lower levels indicate more randomness | |
| Ratio of vertical structures to total recurrence points. | Level of slowly evolving processes in the time series. | Higher levels indicate more activities that linger | |
| Mean length of diagonal structures | Average duration of recurrent physical activity | Higher levels indicate longer recurrent physical activities | |
| Entropy of diagonal line distribution | Diversity of durations of recurrent physical activity patterns | Higher levels indicate recurrent physical activities of varying durations | |
| Mean length of vertical structures | Average duration of static activity patterns | Higher levels indicate lingering physical activities that last longer | |
| Entropy of vertical line distribution | Diversity of durations of static activity patterns | Higher levels indicate lingering physical activities of varying durations | |
| Ratio of LAM to DET measures | Level of statis as compared to deterministic structure | Changes in this ratio has been shown to be an indicator of change in stability[ |
DET: Determinism; LAM: Laminarity; : Average diagonal line length; : Entropy of diagonal line distribution; : Average vertical line length; : Entropy of vertical line distribution; : Laminarity to determinism ratio.
Figure 3Sample time series and corresponding recurrence plots for (a) a pure sine wave (b) random noise (c) sine wave contaminated with additive white noise with signal to noise ratio (SNR) 5 and (d) sine wave contaminated with additive white noise with signal to noise ratio (SNR) 1. A higher SNR implies that the signal is more prominent as compared to the noise.
Figure 4Sample recurrence plots for two individuals. (a) Shows the recurrence plot constructed from a non-depressed individual and (b) shows one constructed from a depressed individual.
Differences in means for demographic and clinical measures for the non-depressed (n=25) () and depressed (n=21) groups ().
| Demographic and clinical characteristics | t-statistic | p-value | ||
|---|---|---|---|---|
| Age | 0.976 | |||
| BMI | 1.315 | 0.200 | ||
| Gender | 24% male | 29% male | -0.384 (z-statistic) | 0.351 |
| Pre-BDI-II | 13.045 | <0.001 | ||
| Post-BDI-II | 6.987 | <0.001 |
The pre and post BDI-II scores are the BDI-II scores before and after the data collection, respectively.
BDI-II: Beck Depression Inventory-II score, : Mean of the non-depressed group, : Mean of the depressed group, SD:Standard deviation.
Differences in means of traditional quantifiers of the actigraphy time series for the non-depressed () and depressed () groups.
| Quantifier | t-statistic | p-value | Cohen’s d | ||
|---|---|---|---|---|---|
| Average activity | 262.388±77.570 | 228.040±84.319 | − 1.427 | 0.161 | 0.435 |
| IS | 0.368±0.325 | 0.424±0.367 | 0.542 | 0.591 | − 0.166 |
| IV | 1.414±0.65 | 1.256±0.55 | − 0.891 | 0.378 | 0.265 |
| RA | 0.905±0.075 | 0.896±0.073 | 0.393 | 0.696 | − 0.117 |
IS: Interdaily stability; IV: Intradaily variability; RA: Relative Amplitude; : Mean of the non-depressed group; : Mean of the depressed group; SD:standard deviation.
Differences in means for the different recurrence plot measures for the non-depressed() and depressed() groups.
| Property | t-statistic | Cohen’s d | |||
|---|---|---|---|---|---|
| 0.359±0.11 | 0.308±0.087 | − 1.725 | 0.091 | 0.511 | |
| 2.436±0.195 | 2.334±0.142 | − 2.018 | 0.050* | 0.594 | |
| 0.853±0.21 | 0.725±0.202 | − 2.104 | 0.041* | 0.634 | |
| 0.511±0.13 | 0.466±0.119 | − 1.168 | 0.249 | 0.353 | |
| 1.446±0.09 | 1.517±0.11 | 2.336 | 0.025* | − 0.721 | |
| 3.079±0.475 | 2.864±0.367 | − 1.731 | 0.090 | 0.512 | |
| 1.352±0.28 | 1.206±0.257 | − 1.707 | 0.095 | 0.520 |
The measures that show statistically significant () differences are indicated with an *
DET: Determinism; : Average diagonal line length; : Entropy of diagonal line distribution; LAM: Laminarity; : Laminarity to determinism ratio; : Average vertical line length; : Entropy of vertical line distribution, : Mean of the non-depressed group; : Mean of the depressed group; SD: Standard deviation.
Figure 5Box plots showing the differences between the non-depressed and depressed groups for the different recurrence plot variables. Significant differences () are marked with asterisks ().
Figure 6Histograms showing the difference in (a) mean diagonal length, (b) entropy and (c) ratio of determinism to laminarity between the non-depressed and depressed groups.
Correlation between commonly used actigraphy measures and recurrence plot measures .
| Avg Activity | IS | IV | RA | ||||
|---|---|---|---|---|---|---|---|
| 1 | 0.999* | − 0.609* | 0.091 | 0.073 | 0.031 | 0.201 | |
| 1 | − 0.607* | 0.107 | 0.073 | 0.035 | 0.206 | ||
| 1 | 0.286 | − 0.314* | − 0.098 | 0.013 | |||
| Avg Activity | 1 | − 0.162 | − 0.132 | 0.157 | |||
| IS | 1 | 0.355* | − 0.140 | ||||
| IV | 1 | − 0.185 | |||||
| RA | 1 |
Only the recurrence plot measures that showed significant differences between the two groups are listed.
The table lists the Spearman correlation coefficient. Significant correlations(p < 0.05) are marked with an *.
IS: Interdaily stability; IV: Intradaily variability; RA: Relative Amplitude; : Average diagonal line length; : Diagonal line entropy; : Laminarity to determinism ratio.