Literature DB >> 34188055

Structural basis of DNA synthesis opposite 8-oxoguanine by human PrimPol primase-polymerase.

Olga Rechkoblit1, Robert E Johnson2, Yogesh K Gupta3,4, Louise Prakash2, Satya Prakash2, Aneel K Aggarwal5.   

Abstract

PrimPol is a human DNA polymerase-primase that localizes to mitochondria and nucleus and bypasses the major oxidative lesion 7,8-dihydro-8-oxoguanine (oxoG) via translesion synthesis, in mostly error-free manner. We present structures of PrimPol insertion complexes with a DNA template-primer and correct dCTP or erroneous dATP opposite the lesion, as well as extension complexes with C or A as a 3'-terminal primer base. We show that during the insertion of C and extension from it, the active site is unperturbed, reflecting the readiness of PrimPol to accommodate oxoG(anti). The misinsertion of A opposite oxoG(syn) also does not alter the active site, and is likely less favorable due to lower thermodynamic stability of the oxoG(syn)•A base-pair. During the extension step, oxoG(syn) induces an opening of its base-pair with A or misalignment of the 3'-A primer terminus. Together, the structures show how PrimPol accurately synthesizes DNA opposite oxidatively damaged DNA in human cells.

Entities:  

Year:  2021        PMID: 34188055     DOI: 10.1038/s41467-021-24317-z

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  47 in total

1.  Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.

Authors:  Luis G Brieba; Brandt F Eichman; Robert J Kokoska; Sylvie Doublié; Tom A Kunkel; Tom Ellenberger
Journal:  EMBO J       Date:  2004-08-05       Impact factor: 11.598

2.  UVA radiation is highly mutagenic in cells that are unable to repair 7,8-dihydro-8-oxoguanine in Saccharomyces cerevisiae.

Authors:  S Kozmin; G Slezak; A Reynaud-Angelin; C Elie; Y de Rycke; S Boiteux; E Sage
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-12       Impact factor: 11.205

Review 3.  Mechanisms of formation, genotoxicity, and mutation of guanine oxidation products.

Authors:  William L Neeley; John M Essigmann
Journal:  Chem Res Toxicol       Date:  2006-04       Impact factor: 3.739

Review 4.  Endogenous DNA Damage as a Source of Genomic Instability in Cancer.

Authors:  Anthony Tubbs; André Nussenzweig
Journal:  Cell       Date:  2017-02-09       Impact factor: 41.582

5.  Fidelity of nucleotide insertion at 8-oxo-7,8-dihydroguanine by mammalian DNA polymerase delta. Steady-state and pre-steady-state kinetic analysis.

Authors:  H J Einolf; F P Guengerich
Journal:  J Biol Chem       Date:  2000-11-10       Impact factor: 5.157

6.  Incorporation and replication of 8-oxo-deoxyguanosine by the human mitochondrial DNA polymerase.

Authors:  Jeremiah W Hanes; David M Thal; Kenneth A Johnson
Journal:  J Biol Chem       Date:  2006-09-27       Impact factor: 5.157

7.  Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase.

Authors:  Gerald W Hsu; Matthias Ober; Thomas Carell; Lorena S Beese
Journal:  Nature       Date:  2004-08-22       Impact factor: 49.962

Review 8.  Oxidative damage to DNA: formation, measurement and biochemical features.

Authors:  Jean Cadet; Thierry Douki; Didier Gasparutto; Jean-Luc Ravanat
Journal:  Mutat Res       Date:  2003-10-29       Impact factor: 2.433

9.  Steady-state and pre-steady-state kinetic analysis of 8-oxo-7,8-dihydroguanosine triphosphate incorporation and extension by replicative and repair DNA polymerases.

Authors:  H J Einolf; N Schnetz-Boutaud; F P Guengerich
Journal:  Biochemistry       Date:  1998-09-22       Impact factor: 3.162

10.  Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG.

Authors:  S Shibutani; M Takeshita; A P Grollman
Journal:  Nature       Date:  1991-01-31       Impact factor: 49.962

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  4 in total

1.  Molecular basis for the initiation of DNA primer synthesis.

Authors:  Arthur W H Li; Katerina Zabrady; Lewis J Bainbridge; Matej Zabrady; Sehr Naseem-Khan; Madison B Berger; Peter Kolesar; G Andrés Cisneros; Aidan J Doherty
Journal:  Nature       Date:  2022-05-04       Impact factor: 69.504

Review 2.  When DNA Polymerases Multitask: Functions Beyond Nucleotidyl Transfer.

Authors:  Denisse Carvajal-Maldonado; Lea Drogalis Beckham; Richard D Wood; Sylvie Doublié
Journal:  Front Mol Biosci       Date:  2022-01-07

3.  Human PrimPol Discrimination against Dideoxynucleotides during Primer Synthesis.

Authors:  Gustavo Carvalho; Alberto Díaz-Talavera; Patricia A Calvo; Luis Blanco; María I Martínez-Jiménez
Journal:  Genes (Basel)       Date:  2021-09-24       Impact factor: 4.096

Review 4.  PrimPol: A Breakthrough among DNA Replication Enzymes and a Potential New Target for Cancer Therapy.

Authors:  Alberto Díaz-Talavera; Cristina Montero-Conde; Luis Javier Leandro-García; Mercedes Robledo
Journal:  Biomolecules       Date:  2022-02-03
  4 in total

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