Literature DB >> 34186291

Coupling chemical biology and vibrational spectroscopy for studies of amyloids in vitro and in cells.

Matthew D Watson1, Jennifer C Lee2.   

Abstract

Amyloid diseases are characterized by the aggregation of various proteins to form insoluble β-sheet-rich fibrils leading to cell death. Vibrational spectroscopies have emerged as attractive methods to study this process because of the rich structural information that can be extracted without large, perturbative probes. Importantly, specific vibrations such as the amide-I band directly report on secondary structure changes, which are key features of amyloid formation. Beyond intrinsic vibrations, the incorporation of unnatural vibrational probes can improve sensitivity for secondary structure determination (e.g. isotopic labeling), can provide residue-specific information of the surrounding polarity (e.g. unnatural amino acid), and are translatable into cellular studies. Here, we review the latest studies that have leveraged tools from chemical biology for the incorporation of novel vibrational probes into amyloidogenic proteins for both mechanistic and cellular studies. Published by Elsevier Ltd.

Entities:  

Keywords:  2D-IR; Amyloid; FTIR; Fibrils; Isotopic labeling; Raman spectroscopy; Secondary structure; Stimulated Raman scattering; Unnatural amino acids

Mesh:

Substances:

Year:  2021        PMID: 34186291      PMCID: PMC8585671          DOI: 10.1016/j.cbpa.2021.05.005

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.972


  62 in total

1.  FTIR reveals structural differences between native beta-sheet proteins and amyloid fibrils.

Authors:  Giorgia Zandomeneghi; Mark R H Krebs; Margaret G McCammon; Marcus Fändrich
Journal:  Protein Sci       Date:  2004-11-10       Impact factor: 6.725

Review 2.  ATR-FTIR: a "rejuvenated" tool to investigate amyloid proteins.

Authors:  Rabia Sarroukh; Erik Goormaghtigh; Jean-Marie Ruysschaert; Vincent Raussens
Journal:  Biochim Biophys Acta       Date:  2013-06-05

Review 3.  Cell-to-cell transmission of pathogenic proteins in neurodegenerative diseases.

Authors:  Jing L Guo; Virginia M Y Lee
Journal:  Nat Med       Date:  2014-02       Impact factor: 53.440

4.  Fast helix formation in the B domain of protein A revealed by site-specific infrared probes.

Authors:  Caitlin M Davis; A Kat Cooper; R Brian Dyer
Journal:  Biochemistry       Date:  2015-02-27       Impact factor: 3.162

5.  A Free Energy Barrier Caused by the Refolding of an Oligomeric Intermediate Controls the Lag Time of Amyloid Formation by hIAPP.

Authors:  Arnaldo L Serrano; Justin P Lomont; Ling-Hsien Tu; Daniel P Raleigh; Martin T Zanni
Journal:  J Am Chem Soc       Date:  2017-11-07       Impact factor: 15.419

6.  Two-color labeling of temporally defined protein populations in mammalian cells.

Authors:  Kimberly E Beatty; David A Tirrell
Journal:  Bioorg Med Chem Lett       Date:  2008-08-19       Impact factor: 2.823

Review 7.  Playing with the Molecules of Life.

Authors:  Douglas D Young; Peter G Schultz
Journal:  ACS Chem Biol       Date:  2018-03-02       Impact factor: 5.100

8.  Monomeric Huntingtin Exon 1 Has Similar Overall Structural Features for Wild-Type and Pathological Polyglutamine Lengths.

Authors:  John B Warner; Kiersten M Ruff; Piau Siong Tan; Edward A Lemke; Rohit V Pappu; Hilal A Lashuel
Journal:  J Am Chem Soc       Date:  2017-10-09       Impact factor: 15.419

9.  Live-cell imaging of alkyne-tagged small biomolecules by stimulated Raman scattering.

Authors:  Lu Wei; Fanghao Hu; Yihui Shen; Zhixing Chen; Yong Yu; Chih-Chun Lin; Meng C Wang; Wei Min
Journal:  Nat Methods       Date:  2014-03-02       Impact factor: 28.547

10.  Site-specific detection of protein secondary structure using 2D IR dihedral indexing: a proposed assembly mechanism of oligomeric hIAPP.

Authors:  Michał Maj; Justin P Lomont; Kacie L Rich; Ariel M Alperstein; Martin T Zanni
Journal:  Chem Sci       Date:  2017-11-03       Impact factor: 9.825

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