Literature DB >> 34185680

Restriction of SARS-CoV-2 replication by targeting programmed -1 ribosomal frameshifting.

Yu Sun1, Laura Abriola2, Rachel O Niederer3, Savannah F Pedersen4, Mia M Alfajaro5,6, Valter Silva Monteiro6, Craig B Wilen5,6, Ya-Chi Ho4, Wendy V Gilbert3, Yulia V Surovtseva2, Brett D Lindenbach7, Junjie U Guo8.   

Abstract

Translation of open reading frame 1b (ORF1b) in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) requires a programmed -1 ribosomal frameshift (-1 PRF) promoted by an RNA pseudoknot. The extent to which SARS-CoV-2 replication may be sensitive to changes in -1 PRF efficiency is currently unknown. Through an unbiased, reporter-based high-throughput compound screen, we identified merafloxacin, a fluoroquinolone antibacterial, as a -1 PRF inhibitor for SARS-CoV-2. Frameshift inhibition by merafloxacin is robust to mutations within the pseudoknot region and is similarly effective on -1 PRF of other betacoronaviruses. Consistent with the essential role of -1 PRF in viral gene expression, merafloxacin impedes SARS-CoV-2 replication in Vero E6 cells, thereby providing proof-of-principle for targeting -1 PRF as a plausible and effective antiviral strategy for SARS-CoV-2 and other coronaviruses.
Copyright © 2021 the Author(s). Published by PNAS.

Entities:  

Keywords:  RNA pseudoknot; coronavirus; merafloxacin; ribosomal frameshifting; translation

Year:  2021        PMID: 34185680     DOI: 10.1073/pnas.2023051118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  Crystal structure of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshifting pseudoknot.

Authors:  Christopher P Jones; Adrian R Ferré-D'Amaré
Journal:  RNA       Date:  2021-11-29       Impact factor: 4.942

2.  Expanding the known structure space for RNA binding: a test of 2,5-diketopiperazine.

Authors:  Diego M Arévalo; Viktoriya S Anokhina; Oliver L R Swart; Benjamin L Miller
Journal:  Org Biomol Chem       Date:  2022-01-19       Impact factor: 3.876

Review 3.  Two Years into the COVID-19 Pandemic: Lessons Learned.

Authors:  Severino Jefferson Ribeiro da Silva; Jessica Catarine Frutuoso do Nascimento; Renata Pessôa Germano Mendes; Klarissa Miranda Guarines; Caroline Targino Alves da Silva; Poliana Gomes da Silva; Jurandy Júnior Ferraz de Magalhães; Justin R J Vigar; Abelardo Silva-Júnior; Alain Kohl; Keith Pardee; Lindomar Pena
Journal:  ACS Infect Dis       Date:  2022-08-08       Impact factor: 5.578

4.  RNA-As-Graphs Motif Atlas-Dual Graph Library of RNA Modules and Viral Frameshifting-Element Applications.

Authors:  Qiyao Zhu; Louis Petingi; Tamar Schlick
Journal:  Int J Mol Sci       Date:  2022-08-17       Impact factor: 6.208

5.  Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome.

Authors:  Pramod R Bhatt; Alain Scaiola; Gary Loughran; Marc Leibundgut; Annika Kratzel; Romane Meurs; René Dreos; Kate M O'Connor; Angus McMillan; Jeffrey W Bode; Volker Thiel; David Gatfield; John F Atkins; Nenad Ban
Journal:  Science       Date:  2021-05-13       Impact factor: 63.714

6.  Length-dependent motions of SARS-CoV-2 frameshifting RNA pseudoknot and alternative conformations suggest avenues for frameshifting suppression.

Authors:  Shuting Yan; Qiyao Zhu; Swati Jain; Tamar Schlick
Journal:  Res Sq       Date:  2022-01-04

Review 7.  Inhibition of SARS-CoV-2 by Targeting Conserved Viral RNA Structures and Sequences.

Authors:  Shalakha Hegde; Zhichao Tang; Junxing Zhao; Jingxin Wang
Journal:  Front Chem       Date:  2021-12-23       Impact factor: 5.221

8.  Programmed -1 Ribosomal Frameshifting in coronaviruses: A therapeutic target.

Authors:  Jamie A Kelly; Michael T Woodside; Jonathan D Dinman
Journal:  Virology       Date:  2020-12-25       Impact factor: 3.513

9.  Structural dynamics of single SARS-CoV-2 pseudoknot molecules reveal topologically distinct conformers.

Authors:  Krishna Neupane; Meng Zhao; Aaron Lyons; Sneha Munshi; Sandaru M Ileperuma; Dustin B Ritchie; Noel Q Hoffer; Abhishek Narayan; Michael T Woodside
Journal:  Nat Commun       Date:  2021-08-06       Impact factor: 14.919

Review 10.  Possible Targets of Pan-Coronavirus Antiviral Strategies for Emerging or Re-Emerging Coronaviruses.

Authors:  Xue Li; Liying Zhang; Si Chen; Hongsheng Ouyang; Linzhu Ren
Journal:  Microorganisms       Date:  2021-07-10
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