Literature DB >> 34181136

Reclassification of Facklamia ignava, Facklamia sourekii and Facklamia tabacinasalis as Falseniella ignava gen. nov., comb. nov., Hutsoniella sourekii gen. nov., comb. nov., and Ruoffia tabacinasalis gen. nov., comb. nov., and description of Ruoffia halotolerans sp. nov., isolated from hypersaline Inland Sea of Qatar.

Rashmi Fotedar1, Paul A Lawson2, Krithivasan Sankaranarayanan2,3, Matthew E Caldwell2, Aisha Zeyara4, Amina Al Malki4, Ridhima Kaul5, Hamad Al Shamari4, Mohammad Ali6, Masoud Al Marri4.   

Abstract

A Gram-stain-positive, non-pigmented, coccus-shaped, facultatively anaerobic and α-hemolytic bacterium designated as INB8T was isolated from a hypersaline marine water sample collected at the Inland Sea of Qatar. The isolate was able to grow at 25-40 °C (optimum, 30 °C), at pH 5-11 and with 2-8% NaCl. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain INB8T was placed within the family Aerococcaceae with the highest sequence similarity to Facklamia tabacinasalis CCUG 30090T (99.5%), followed by Facklamia hominis CCUG 36813T (93.9%), Facklamia sourekii Y17312T (93.8%), Facklamia ignava CCUG 37419T (93.6%), Facklamia miroungae CCUG 42728T (93.5%), Suicoccus acidiformans ZY16052T (93.5%), Facklamia languida CCUG 37842T (93.2%), Ignavigranum ruoffiae (93.1%), and Dolosicoccus paucivorans DSM 15742T (90.8%). Average nucleotide identity and digital DNA-DNA hybridization values between strain INB8T and F. tabacinasalis CCUG 30090T were determined to be 94.5% and 58.9% respectively, confirming strain INB8T represents a novel species. The major fatty acids were C14:0, C16:0, C18:0 and C18:1 ω9c. The G + C content of strain INB8T determined from the genome was 36.3 mol%. Based on the phylogenetic, chemotaxonomic and phenotypic information, it is proposed that Facklamia tabacinasalis should be reclassified as Ruoffia tabacinasalis, Facklamia ignava be reclassified as Falseniella ignava, and Facklamia sourekii be reclassified Hutsoniella sourekii. It is further proposed that strain INB8T should be classified as a species of the genus Ruoffia for which the name Ruoffia halotolerans sp. nov. is proposed. The type strain is INB8T (= LMG 30291T = CCUG 70701T = QCC/B60/17T).

Entities:  

Keywords:  Marine, Qatar; Ruoffia halotolerans gen. nov. sp. nov

Year:  2021        PMID: 34181136     DOI: 10.1007/s10482-021-01587-7

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  29 in total

1.  Phenotypic and phylogenetic characterization of some Globicatella-like organisms from human sources: description of Facklamia hominis gen. nov., sp. nov.

Authors:  M D Collins; E Falsen; J Lemozy; E Akervall; B Sjödén; P A Lawson
Journal:  Int J Syst Bacteriol       Date:  1997-07

2.  What can genome-scale metabolic network reconstructions do for prokaryotic systematics?

Authors:  Francisco Barona-Gómez; Pablo Cruz-Morales; Lianet Noda-García
Journal:  Antonie Van Leeuwenhoek       Date:  2011-10-21       Impact factor: 2.271

3.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

4.  Urinary MHPG: improved tricyclic antidepressant drug selection in clinical practice.

Authors: 
Journal:  Med J Aust       Date:  1979-09-08       Impact factor: 7.738

5.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

6.  Facklamia tabacinasalis sp. nov., from powdered tobacco.

Authors:  M D Collins; R A Hutson; E Falsen; B Sjödén
Journal:  Int J Syst Bacteriol       Date:  1999-07

7.  Facklamia languida sp. nov., isolated from human clinical specimens.

Authors:  P A Lawson; M D Collins; E Falsen; B Sjöden; R R Facklam
Journal:  J Clin Microbiol       Date:  1999-04       Impact factor: 5.948

8.  Facklamia sourekii sp. nov., isolated from human sources.

Authors:  M D Collins; R A Hutson; E Falsen; B Sjödén
Journal:  Int J Syst Bacteriol       Date:  1999-04

9.  Facklamia ignava sp. nov., isolated from human clinical specimens.

Authors:  M D Collins; P A Lawson; R Monasterio; E Falsen; B Sjöden; R R Facklam
Journal:  J Clin Microbiol       Date:  1998-07       Impact factor: 5.948

10.  KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold.

Authors:  Takuya Aramaki; Romain Blanc-Mathieu; Hisashi Endo; Koichi Ohkubo; Minoru Kanehisa; Susumu Goto; Hiroyuki Ogata
Journal:  Bioinformatics       Date:  2020-04-01       Impact factor: 6.937

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