Literature DB >> 34179899

Translational NLP: A New Paradigm and General Principles for Natural Language Processing Research.

Denis Newman-Griffis1, Jill Fain Lehman2, Carolyn Rosé3, Harry Hochheiser1.   

Abstract

Natural language processing (NLP) research combines the study of universal principles, through basic science, with applied science targeting specific use cases and settings. However, the process of exchange between basic NLP and applications is often assumed to emerge naturally, resulting in many innovations going unapplied and many important questions left unstudied. We describe a new paradigm of Translational NLP, which aims to structure and facilitate the processes by which basic and applied NLP research inform one another. Translational NLP thus presents a third research paradigm, focused on understanding the challenges posed by application needs and how these challenges can drive innovation in basic science and technology design. We show that many significant advances in NLP research have emerged from the intersection of basic principles with application needs, and present a conceptual framework outlining the stakeholders and key questions in translational research. Our framework provides a roadmap for developing Translational NLP as a dedicated research area, and identifies general translational principles to facilitate exchange between basic and applied research.

Entities:  

Year:  2021        PMID: 34179899      PMCID: PMC8223521     

Source DB:  PubMed          Journal:  Proc Conf


  29 in total

1.  Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions.

Authors:  Wendy W Chapman; Prakash M Nadkarni; Lynette Hirschman; Leonard W D'Avolio; Guergana K Savova; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2011 Sep-Oct       Impact factor: 4.497

2.  Making Machine Learning Models Clinically Useful.

Authors:  Nigam H Shah; Arnold Milstein; Steven C Bagley PhD
Journal:  JAMA       Date:  2019-10-08       Impact factor: 56.272

3.  Validation of a Semiautomated Natural Language Processing-Based Procedure for Meta-Analysis of Cancer Susceptibility Gene Penetrance.

Authors:  Zhengyi Deng; Kanhua Yin; Yujia Bao; Victor Diego Armengol; Cathy Wang; Ankur Tiwari; Regina Barzilay; Giovanni Parmigiani; Danielle Braun; Kevin S Hughes
Journal:  JCO Clin Cancer Inform       Date:  2019-08

4.  Development and application of a high throughput natural language processing architecture to convert all clinical documents in a clinical data warehouse into standardized medical vocabularies.

Authors:  Majid Afshar; Dmitriy Dligach; Brihat Sharma; Xiaoyuan Cai; Jason Boyda; Steven Birch; Daniel Valdez; Suzan Zelisko; Cara Joyce; François Modave; Ron Price
Journal:  J Am Med Inform Assoc       Date:  2019-11-01       Impact factor: 4.497

5.  Interactive NLP in Clinical Care: Identifying Incidental Findings in Radiology Reports.

Authors:  Gaurav Trivedi; Esmaeel R Dadashzadeh; Robert M Handzel; Wendy W Chapman; Shyam Visweswaran; Harry Hochheiser
Journal:  Appl Clin Inform       Date:  2019-09-04       Impact factor: 2.342

6.  Stop Explaining Black Box Machine Learning Models for High Stakes Decisions and Use Interpretable Models Instead.

Authors:  Cynthia Rudin
Journal:  Nat Mach Intell       Date:  2019-05-13

7.  Usability Evaluation of an Unstructured Clinical Document Query Tool for Researchers.

Authors:  Gretchen Hultman; Reed McEwan; Serguei Pakhomov; Elizabeth Lindemann; Steven Skube; Genevieve B Melton
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2018-05-18

8.  CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines.

Authors:  Ergin Soysal; Jingqi Wang; Min Jiang; Yonghui Wu; Serguei Pakhomov; Hongfang Liu; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2018-03-01       Impact factor: 4.497

9.  Comparing clinician descriptions of frailty and geriatric syndromes using electronic health records: a retrospective cohort study.

Authors:  Laura J Anzaldi; Ashwini Davison; Cynthia M Boyd; Bruce Leff; Hadi Kharrazi
Journal:  BMC Geriatr       Date:  2017-10-25       Impact factor: 3.921

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  2 in total

1.  Critical Care Database Comprising Patients With Infection.

Authors:  Ping Xu; Lin Chen; Yuanfang Zhu; Shuai Yu; Rangui Chen; Wenbin Huang; Fuli Wu; Zhongheng Zhang
Journal:  Front Public Health       Date:  2022-03-17

2.  Information Extraction Framework for Disability Determination Using a Mental Functioning Use-Case.

Authors:  Ayah Zirikly; Bart Desmet; Denis Newman-Griffis; Elizabeth E Marfeo; Christine McDonough; Howard Goldman; Leighton Chan
Journal:  JMIR Med Inform       Date:  2022-03-18
  2 in total

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