| Literature DB >> 34179098 |
Gustavo D Campagnaro1, Edward Nay2, Michael J Plevin2, Angela K Cruz1, Pegine B Walrad2.
Abstract
A large number of eukaryotic proteins are processed by single or combinatorial post-translational covalent modifications that may alter their activity, interactions and fate. The set of modifications of each protein may be considered a "regulatory code". Among the PTMs, arginine methylation, catalyzed by protein arginine methyltransferases (PRMTs), can affect how a protein interacts with other macromolecules such as nucleic acids or other proteins. In fact, many RNA-binding (RBPs) proteins are targets of PRMTs. The methylation status of RBPs may affect the expression of their bound RNAs and impact a diverse range of physiological and pathological cellular processes. Unlike most eukaryotes, Kinetoplastids have overwhelmingly intronless genes that are arranged within polycistronic units from which mature mRNAs are generated by trans-splicing. Gene expression in these organisms is thus highly dependent on post-transcriptional control, and therefore on the action of RBPs. These genetic features make trypanosomatids excellent models for the study of post-transcriptional regulation of gene expression. The roles of PRMTs in controlling the activity of RBPs in pathogenic kinetoplastids have now been studied for close to 2 decades with important advances achieved in recent years. These include the finding that about 10% of the Trypanosoma brucei proteome carries arginine methylation and that arginine methylation controls Leishmania:host interaction. Herein, we review how trypanosomatid PRMTs regulate the activity of RBPs, including by modulating interactions with RNA and/or protein complex formation, and discuss how this impacts cellular and biological processes. We further highlight unique structural features of trypanosomatid PRMTs and how it contributes to their singular functionality.Entities:
Keywords: Kinetoplastid; Leishmania; PRMT; RNA-binding protein; Trypanosoma; arginine methylation; gene expression; post-translational modification
Year: 2021 PMID: 34179098 PMCID: PMC8226133 DOI: 10.3389/fmolb.2021.692668
Source DB: PubMed Journal: Front Mol Biosci ISSN: 2296-889X
FIGURE 1Molecular effects of arginine methylation in T. brucei and L. major. (A), Protein arginine methyltranferases (PRMTs) from types I, II and III are able to generate monomethylarginine (MMA) by transfering the methyl group from S-adenosylmethionine to the terminal nitrogen atom of arginine residues. While type III PRMTs only produce monomethylated products, type I PRMTs catalyze a second round of methylation at the same atom, generating asymmetrically dimethylated arginine (aDMA), whereas type II PRMTs add another methyl group to the adjacent terminal nitrogen, forming symmetric dimethylarginine (sDMA). The inset table contains the gene IDs of PRMT genes found in the genome of T. brucei and L. major. (B), Schematic representation of how methylation affects the capability of RBP16 to form macromolecular complexes containing proteins (gray) and RNA (red line) in T. brucei. The RBP16 intrinsically disordered RGG domain is methylated by TbPRMT1 on Arg78 and Arg85, whereas Arg93 is (potentially) methylated by either or both TbPRMT5 and TbPRMT7 (left). In its methylated state, RBP16 can associate with other proteins (5S complex) or with proteins and RNA (11S complex). A non-methylatable version of RBP16 is still able to associate with RNA but loses the capability to form multiprotein complexes. Non-methylated arginines are represented by gray circles and methylated arginines by red circles. (C), Representation of the methylation mediated by L. major PRMT7 on Alba3. Alba3 interacts with Alba1 and δ-amastin transcripts. Methylated Alba3 has a stronger association with δ-amastin transcripts and protects the RNA from degradation. The ability of Alba3 to bind δ-amastin is reduced upon LmjPRMT7-knockout, which reduces the half-life of the transcripts from approximately 4 h to around 1 h. *PRMT3 is currently known as PRMT1PRO in T. brucei; despite its similarity to mammalian PRMT3, TbPRMT3 misses key residues for PRMT activity, and is rather a prozyme for the catalytic TbPRMT1, which was thus renamed to TbPRMT1ENZ.
FIGURE 2The structural biology of T. brucei PRMTs. (A), Each of the five PRMT homologs in T. brucei contain the four canonical domains indicated. The SAM-binding domain contains the residues that interact with a SAM molecule and the target arginine substrate. The β-barrel domain contains residues that interact with the arginine substrate. The arm (dimerization arm) within the β-barrel domain interacts with another subunit via contacts to the SAM-binding domain. TbPRMT N-termini have significant variability with elusive functional roles. Key conserved double E loop and THW loop are also indicated. B-D, The core dimeric interfaces of (B) TbPRMT1ENZ-TbPRMT1PRO (PDB: 6DNZ) (C) TbPRMT6 (PDB: 4LWP) and (D) TbPRMT7 (PDB: 4M38). The surface structure represents the second subunit (or TbPRMT1PRO indicated in B. The SAH and Arg peptides are indicated by pink-blue-red and cyan-blue-red sticks respectively. (E) The active site of TbPRMT7 (PDB: 4M38) as a representative. The SAH molecule and arginine substrate are indicated. The double E loop (E172 and E181) and THW loop (Q329) residues interact with the arginine substrate side chain. Dashed lines indicate hydrogen bonds. The combination of hydrogen bonds and electrostatic interactions from E172 and E181 with the arginine guanidino group result in strong salt bridges. Q329 forms a hydrogen bond to the guanidino group via its side chain amide oxygen.