Literature DB >> 34176739

A roadmap for rRNA folding and assembly during transcription.

Margaret L Rodgers1, Sarah A Woodson2.   

Abstract

Ribonucleoprotein (RNP) assembly typically begins during transcription when folding of the newly synthesized RNA is coupled with the recruitment of RNA-binding proteins (RBPs). Upon binding, the proteins induce structural rearrangements in the RNA that are crucial for the next steps of assembly. Focusing primarily on bacterial ribosome assembly, we discuss recent work showing that early RNA-protein interactions are more dynamic than previously supposed, and remain so, until sufficient proteins are recruited to each transcript to consolidate an entire domain of the RNP. We also review studies showing that stable assembly of an RNP competes against modification and processing of the RNA. Finally, we discuss how transcription sets the timeline for competing and cooperative RNA-RBP interactions that determine the fate of the nascent RNA. How this dance is coordinated is the focus of this review.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RNA folding; RNA–protein interactions; cotranscriptional folding; ribosome assembly; single-molecule fluorescence

Mesh:

Substances:

Year:  2021        PMID: 34176739      PMCID: PMC8526401          DOI: 10.1016/j.tibs.2021.05.009

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  88 in total

1.  Transient Protein-RNA Interactions Guide Nascent Ribosomal RNA Folding.

Authors:  Olivier Duss; Galina A Stepanyuk; Joseph D Puglisi; James R Williamson
Journal:  Cell       Date:  2019-11-21       Impact factor: 41.582

2.  Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures.

Authors:  Terrence N Wong; Tobin R Sosnick; Tao Pan
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-06       Impact factor: 11.205

3.  Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.

Authors:  Jingdong Cheng; Jochen Baßler; Paulina Fischer; Benjamin Lau; Nikola Kellner; Ruth Kunze; Sabine Griesel; Martina Kallas; Otto Berninghausen; Daniela Strauss; Roland Beckmann; Ed Hurt
Journal:  Mol Cell       Date:  2019-08-01       Impact factor: 17.970

Review 4.  DExD/H-box RNA helicases in ribosome biogenesis.

Authors:  Roman Martin; Annika U Straub; Carmen Doebele; Markus T Bohnsack
Journal:  RNA Biol       Date:  2012-08-24       Impact factor: 4.652

5.  Chemical evidence for domain assembly of the Escherichia coli 30S ribosome.

Authors:  C J Weitzmann; P R Cunningham; K Nurse; J Ofengand
Journal:  FASEB J       Date:  1993-01       Impact factor: 5.191

6.  Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice.

Authors:  Sujatha P Koduvayur; Sarah A Woodson
Journal:  RNA       Date:  2004-08-30       Impact factor: 4.942

Review 7.  Yeast and human RNA helicases involved in ribosome biogenesis: current status and perspectives.

Authors:  Olga Rodríguez-Galán; Juan José García-Gómez; Jesús de la Cruz
Journal:  Biochim Biophys Acta       Date:  2013-01-26

Review 8.  Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function.

Authors:  Katherine E Sloan; Ahmed S Warda; Sunny Sharma; Karl-Dieter Entian; Denis L J Lafontaine; Markus T Bohnsack
Journal:  RNA Biol       Date:  2016-12-02       Impact factor: 4.652

9.  RNA helicases mediate structural transitions and compositional changes in pre-ribosomal complexes.

Authors:  Lukas Brüning; Philipp Hackert; Roman Martin; Jimena Davila Gallesio; Gerald Ryan R Aquino; Henning Urlaub; Katherine E Sloan; Markus T Bohnsack
Journal:  Nat Commun       Date:  2018-12-19       Impact factor: 14.919

10.  Protein-guided RNA dynamics during early ribosome assembly.

Authors:  Hajin Kim; Sanjaya C Abeysirigunawarden; Ke Chen; Megan Mayerle; Kaushik Ragunathan; Zaida Luthey-Schulten; Taekjip Ha; Sarah A Woodson
Journal:  Nature       Date:  2014-02-12       Impact factor: 49.962

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  7 in total

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Authors:  Valentin Mitterer; Brigitte Pertschy
Journal:  RNA Biol       Date:  2022-01       Impact factor: 4.766

3.  NAP1L5 Promotes Nucleolar Hypertrophy and Is Required for Translation Activation During Cardiomyocyte Hypertrophy.

Authors:  Ningning Guo; Di Zheng; Jiaxin Sun; Jian Lv; Shun Wang; Yu Fang; Zhenyi Zhao; Sai Zeng; Qiuxiao Guo; Jingjing Tong; Zhihua Wang
Journal:  Front Cardiovasc Med       Date:  2021-12-17

Review 4.  Nucleic Acid Thermodynamics Derived from Mechanical Unzipping Experiments.

Authors:  Paolo Rissone; Felix Ritort
Journal:  Life (Basel)       Date:  2022-07-20

5.  Cryo-EM reveals an entangled kinetic trap in the folding of a catalytic RNA.

Authors:  Steve L Bonilla; Quentin Vicens; Jeffrey S Kieft
Journal:  Sci Adv       Date:  2022-08-26       Impact factor: 14.957

6.  Prp43/DHX15 exemplify RNA helicase multifunctionality in the gene expression network.

Authors:  Katherine E Bohnsack; Nidhi Kanwal; Markus T Bohnsack
Journal:  Nucleic Acids Res       Date:  2022-08-22       Impact factor: 19.160

Review 7.  Nucleolus and Nucleolar Stress: From Cell Fate Decision to Disease Development.

Authors:  Lu Hua; Daliang Yan; Chunhua Wan; Baoying Hu
Journal:  Cells       Date:  2022-09-27       Impact factor: 7.666

  7 in total

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