| Literature DB >> 34176064 |
Alizée Bozonnat1,2, Florence Assan3, Jérôme LeGoff4, Emmanuelle Bourrat1,2, Hervé Bachelez5,6.
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Year: 2021 PMID: 34176064 PMCID: PMC8235915 DOI: 10.1007/s10875-021-01076-6
Source DB: PubMed Journal: J Clin Immunol ISSN: 0271-9142 Impact factor: 8.317
Fig. 1On the left, a Family pedigree. b Acute flare up of generalized pustular psoriasis of the proband (patient II.2). On the right, Interferon Signature Genes (ISG) and neutrophil signature genes mRNA quantitative assessment in whole blood from patient II.2 (proband) and patient II.4 (proband’s sister). c Median fold expression of interferon-stimulated genes (ISG)*. d Median fold expression of neutrophil signature genes**. *ISG signature assessment: Total RNA was extracted from whole blood using the PAXgene RNA isolation kit (PreAnalytix, Hombrechtikon, Switzerland). The ISG mRNA expression was assessed using the nanoString (NanoString, Seattle, WA, USA) procedure; 200 ng of RNA was hybridized to the probes (a reporter probe and a capture probe) at 67 °C for 16–21 h. Samples were then inserted into the nCounter Prep Station for the removal of excessive probes, purification, and immobilization onto the internal surface of a sample cartridge for 2–3 h. Finally, the sample cartridge was transferred to the nCounter Digital Analyzer, where color codes were counted and tabulated for each target molecule. Count numbers obtained for the ISGs were normalized by the geometric mean of three housekeeping genes count numbers (β-actin, HPRT1 [hypoxanthine phosphoribosyltransferase 1] and POLR2A [RNA polymerase II subunit A]) as well as the negative and positive control values using the nSolver software. The median fold change of the ISGs compared to the median of the healthy controls. ** Neutrophil signature genes include CEACAM6, CRISP3, DEFA4, LCN2, LTF, and MMP8