Literature DB >> 34167372

Acute Brain-Derived Neurotrophic Factor DNA Methylation Trajectories in Cerebrospinal Fluid and Associations With Outcomes Following Severe Traumatic Brain Injury in Adults.

Amery Treble-Barna1, Lacey W Heinsberg2,3, Ava M Puccio4, John R Shaffer2,5, David O Okonkwo4, Sue R Beers6, Daniel E Weeks2,7, Yvette P Conley2,8.   

Abstract

Background. Epigenetic biomarkers have the potential to explain outcome heterogeneity following traumatic brain injury (TBI) but are largely unexplored. Objective. This exploratory pilot study characterized brain-derived neurotrophic factor (BDNF) DNA methylation trajectories following severe TBI. Methods. Brain-derived neurotrophic factor DNA methylation trajectories in cerebrospinal fluid (CSF) over the first 5 days following severe TBI in 112 adults were examined in association with 3- and 12-month outcomes. Results. Group-based trajectory analysis revealed low and high DNA methylation groups at two BDNF cytosine-phosphate-guanine (CpG) targets that showed suggestive associations (P < .05) with outcomes. Membership in the high DNA methylation groups was associated with better outcomes after controlling for age, sex, and injury severity. Associations of age × trajectory group interactions with outcomes at a third CpG site revealed a pattern of the same or better outcomes with higher ages in the high DNA methylation group and worse outcomes with higher ages in the low DNA methylation group. Conclusions. Although no observed associations met the empirical significance threshold after correcting for multiple comparisons, suggestive associations of the main effect models were consistent in their direction of effect and were observed across two CpG sites and two outcome time points. Results suggest that higher acute CSF BDNF DNA methylation may promote recovery following severe TBI in adults, and this effect may be more robust with higher age. While the results require replication in larger and racially diverse independent samples, BDNF DNA methylation may serve as an early postinjury biomarker helping to explain outcome heterogeneity following TBI.

Entities:  

Keywords:  DNA methylation; brain-derived neurotrophic factor; clinical outcomes; epigenetics; traumatic brain injury

Mesh:

Substances:

Year:  2021        PMID: 34167372      PMCID: PMC8546867          DOI: 10.1177/15459683211028245

Source DB:  PubMed          Journal:  Neurorehabil Neural Repair        ISSN: 1545-9683            Impact factor:   3.919


  65 in total

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2.  Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.

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Journal:  Bioinformatics       Date:  2014-01-28       Impact factor: 6.937

3.  Distinctive patterns of DNA methylation associated with Parkinson disease: identification of concordant epigenetic changes in brain and peripheral blood leukocytes.

Authors:  Eliezer Masliah; Wilmar Dumaop; Douglas Galasko; Paula Desplats
Journal:  Epigenetics       Date:  2013-08-01       Impact factor: 4.528

4.  The brain-derived neurotrophic factor val66met polymorphism and variation in human cortical morphology.

Authors:  Lukas Pezawas; Beth A Verchinski; Venkata S Mattay; Joseph H Callicott; Bhaskar S Kolachana; Richard E Straub; Michael F Egan; Andreas Meyer-Lindenberg; Daniel R Weinberger
Journal:  J Neurosci       Date:  2004-11-10       Impact factor: 6.167

5.  ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip.

Authors:  Zongli Xu; Liang Niu; Leping Li; Jack A Taylor
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

6.  DNA methylation-related chromatin remodeling in activity-dependent BDNF gene regulation.

Authors:  Keri Martinowich; Daisuke Hattori; Hao Wu; Shaun Fouse; Fei He; Yan Hu; Guoping Fan; Yi E Sun
Journal:  Science       Date:  2003-10-31       Impact factor: 47.728

7.  Brain-derived neurotrophic factor (BDNF)-epigenetic regulation in unipolar and bipolar affective disorder.

Authors:  Laura Carlberg; Janine Scheibelreiter; Melanie R Hassler; Monika Schloegelhofer; Michaela Schmoeger; Birgit Ludwig; Siegfried Kasper; Harald Aschauer; Gerda Egger; Alexandra Schosser
Journal:  J Affect Disord       Date:  2014-07-19       Impact factor: 4.839

Review 8.  Epigenetics in human disease and prospects for epigenetic therapy.

Authors:  Gerda Egger; Gangning Liang; Ana Aparicio; Peter A Jones
Journal:  Nature       Date:  2004-05-27       Impact factor: 49.962

9.  Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood.

Authors:  Matthew N Davies; Manuela Volta; Ruth Pidsley; Katie Lunnon; Abhishek Dixit; Simon Lovestone; Cristian Coarfa; R Alan Harris; Aleksandar Milosavljevic; Claire Troakes; Safa Al-Sarraj; Richard Dobson; Leonard C Schalkwyk; Jonathan Mill
Journal:  Genome Biol       Date:  2012-06-15       Impact factor: 13.583

10.  BNDF methylation in mothers and newborns is associated with maternal exposure to war trauma.

Authors:  Darlene A Kertes; Samarth S Bhatt; Hayley S Kamin; David A Hughes; Nicole C Rodney; Connie J Mulligan
Journal:  Clin Epigenetics       Date:  2017-06-30       Impact factor: 6.551

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  2 in total

1.  DNA Methylation-Related circRNA_0116449 Is Involved in Lipid Peroxidation in Traumatic Brain Injury.

Authors:  Ping Zheng; Dabin Ren; Cong Yu; Xiaoxue Zhang; Yisong Zhang
Journal:  Front Mol Neurosci       Date:  2022-06-02       Impact factor: 6.261

Review 2.  Epigenetic Modifications and Their Potential Contribution to Traumatic Brain Injury Pathobiology and Outcome.

Authors:  Laura Zima; Rebecca West; Paul Smolen; Nobuhide Kobori; Georgene Hergenroeder; HuiMahn A Choi; Anthony N Moore; John B Redell; Pramod K Dash
Journal:  J Neurotrauma       Date:  2022-06-14       Impact factor: 4.869

  2 in total

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