Literature DB >> 34165706

Methods to Identify and Study the Evolution of Pseudogenes Using a Phylogenetic Approach.

Jacques Dainat1, Pierre Pontarotti2,3.   

Abstract

The discovery that pseudogenes are involved in important biological processes has excited enthusiasm and increased the research interest on them. An accurate detection and analysis of pseudogenes can be achieved using comparative methods, but only the use of phylogenetic tools can provide accurate information about their birth, their evolution and their death, hence about the impact that they have on genes and genomes. Here, phylogenetic methods that allow for studying pseudogene history are described.

Entities:  

Keywords:  Orthology; Paralogy; Phylogeny; Pseudogene; Speciation

Year:  2021        PMID: 34165706     DOI: 10.1007/978-1-0716-1503-4_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  32 in total

1.  A genome-wide survey of human pseudogenes.

Authors:  David Torrents; Mikita Suyama; Evgeny Zdobnov; Peer Bork
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

Review 2.  Comparative analysis of processed pseudogenes in the mouse and human genomes.

Authors:  Zhaolei Zhang; Nick Carriero; Mark Gerstein
Journal:  Trends Genet       Date:  2004-02       Impact factor: 11.639

3.  The real life of pseudogenes.

Authors:  Mark Gerstein; Deyou Zheng
Journal:  Sci Am       Date:  2006-08       Impact factor: 2.142

Review 4.  Processed pseudogenes: characteristics and evolution.

Authors:  E F Vanin
Journal:  Annu Rev Genet       Date:  1985       Impact factor: 16.830

5.  Pseudogenes as a paradigm of neutral evolution.

Authors:  W H Li; T Gojobori; M Nei
Journal:  Nature       Date:  1981-07-16       Impact factor: 49.962

6.  Genome-wide identification of pseudogenes capable of disease-causing gene conversion.

Authors:  Jared M Bischof; Annie P Chiang; Todd E Scheetz; Edwin M Stone; Thomas L Casavant; Val C Sheffield; Terry A Braun
Journal:  Hum Mutat       Date:  2006-06       Impact factor: 4.878

Review 7.  Gene duplication as a major force in evolution.

Authors:  Santoshkumar Magadum; Urbi Banerjee; Priyadharshini Murugan; Doddabhimappa Gangapur; Rajasekar Ravikesavan
Journal:  J Genet       Date:  2013-04       Impact factor: 1.166

8.  Inferring the pattern of spontaneous mutation from the pattern of substitution in unitary pseudogenes of Mycobacterium leprae and a comparison of mutation patterns among distantly related organisms.

Authors:  Amir Mitchell; Dan Graur
Journal:  J Mol Evol       Date:  2005-11-02       Impact factor: 3.973

9.  HOPPSIGEN: a database of human and mouse processed pseudogenes.

Authors:  Adel Khelifi; Khelifi Adel; Laurent Duret; Duret Laurent; Dominique Mouchiroud; Mouchiroud Dominique
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

10.  Gene losses during human origins.

Authors:  Xiaoxia Wang; Wendy E Grus; Jianzhi Zhang
Journal:  PLoS Biol       Date:  2006-02-14       Impact factor: 8.029

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