| Literature DB >> 34165164 |
Yu Yan1, Hong Liu2, Jiarong Yi3, Zizi Chen3, Jia Chen3, Jianfei Zhang4, Kewa Gao3, Siqi He3, Aijun Wang5, Ping Jin1, Feng Hu6, Jianda Zhou3.
Abstract
In early pregnancy, fetal skin wounds can heal quickly and undergo a transition period from scarless healing to scar formation. The aim of the present study was to identify potential biomarkers associated with scarless repair of cleft lips, in order to determine the intrinsic factors leading to scar formation in embryonic tissue. A stable model of cleft lip was established using microsurgery by constructing a wedge‑shaped cleft lip‑like defect in fetal rats at gestational age (GA) 16.5 and GA18.5. The GA16.5 and GA18.5 groups were used to model scarless healing and scar formation, respectively. The fetuses were returned to the uterus following surgery, then removed 72 h after the procedure. Macroscopic observation of the cleft defect and histological examination were carried out. Reverse transcription‑quantitative (RT‑q) PCR and parallel reaction monitoring (PRM) were used to detect mRNA and protein expression levels, respectively. The upper‑left lip completely healed 72 h after surgery in the GA16.5 group of fetal rats. However, this was not the case in the GA18.5 group. Histological examination indicated new follicles visible under the epidermis of the scarless group (GA16.5). Scarring was visible on the upper‑left cleft lip wound of the fetal rats in the GA18.5 group. The expression of some growth and pro‑inflammatory factors, including TNF‑α, were also different between two groups. Label‑free quantification was used to identified differentially expressed proteins and five differentially expressed proteins (Smad4, Fabp5, S100a4, S100a8 and S100a9) were identified. The relative expression of these molecules at the mRNA and protein levels were measured using RT‑qPCR and PRM. These molecules may represent potential biomarkers for the scarless repair of fetal rat cleft lip wounds.Entities:
Keywords: cleft lip; label‑free quantification; parallel reaction monitoring; proteomics; scarless healing
Year: 2021 PMID: 34165164 PMCID: PMC8240453 DOI: 10.3892/mmr.2021.12235
Source DB: PubMed Journal: Mol Med Rep ISSN: 1791-2997 Impact factor: 2.952
Figure 1.Macroscopic appearance of the cleft lip in the GA16.5 and GA18.5 groups. Arrows indicate the surgical site on the upper-left cleft lip of the fetus. (A-D) Macroscopic appearance of the upper-left lip of a fetus from the GA16.5 group (A) prior to surgery, (B) during surgery, (C) immediately after surgery and (D) 72 h after surgery. (E-H) Macroscopic appearance of the upper-left lip of a fetus from the GA18.5 group (E) prior to surgery, (F) during surgery, (G) immediately after surgery and (H) 72 h after surgery. GA, gestational age.
Figure 2.H&E staining of upper lip tissue 72 h following model establishment in the GA16.5 group. (A) H&E staining of the upper lip tissue. The slight depression in the upper-left lip identifies the location where the cleft lip-like defect was created. The site of the defect is completely epithelialized. Magnification, ×40. (B) Normal subepidermal structure of the upper-right lip. Magnification, ×400. (C) New follicular structures can be observed under the epidermis of the upper-left lip. Magnification, ×400. GA, gestational age; H&E, hematoxylin and eosin.
Figure 4.IHC staining 72 h following model establishment in the GA16.5 group. (A) IHC staining of the upper lip tissue. The slight depression in the upper-left lip identifies the location where the cleft lip-like defect was created. Magnification, ×40. (B) Normal subepidermal structure of the upper-right lip. Magnification, ×400. (C) The expression of type-I collagen in the upper-left lip is almost indistinguishable from the upper-right lip. Magnification, ×400. GA, gestational age; IHC, immunohistochemistry.
Figure 3.Masson's Trichrome staining 72 h following model establishment in the GA16.5 group. (A) Masson's Trichrome staining of the upper lip tissue. The slight depression in the upper-left lip identifies the location where the cleft lip-like defect was created. Magnification, ×40. (B) Normal subepidermal structure of the upper-right lip. Magnification, ×400. (C) The fine network of collagen fibers (stained blue) and new hair follicle structures are visible under the epidermis of the upper-left lip. Magnification, ×400. GA, gestational age.
Figure 5.H&E staining of upper lip tissue 72 h following model establishment in the GA18.5 group. (A) H&E staining of the upper lip tissue. A clear depression in the upper-left lip identifies the location where the cleft lip-like defect was created. The site of the defect is not completely healed. Magnification, ×40. (B) Normal subepidermal structure of the upper-right lip. Magnification, ×400. (C) No new hair follicle structures were observed under the epidermis. New capillaries, an increased number of fibroblasts and an increased volume of extracellular matrix can be observed around the wound. Magnification, ×400. GA, gestational age.
Figure 6.Masson's Trichrome staining 72 h after model establishment in the GA18.5 group. (A) Masson's Trichrome staining of the upper lip tissue. A clear depression in the upper-left lip identifies the location where the cleft lip-like defect was created Magnification, ×40. (B) Normal subepidermal structure of the upper-right lip. Magnification, ×400. (C) The collagen fibers (stained blue) are visible and no new hair follicle structures are observed under the epidermis of the upper-left lip. Magnification, ×400. GA, gestational age.
Figure 7.IHC staining 72 h after model establishment in the GA18.5 group. (A) IHC staining of the upper lip tissue. A clear depression in the upper-left lip identifies the location where the cleft lip-like defect was created Magnification, ×40. (B) Normal subepidermal structure of the upper-right lip. Magnification, ×400. (C) The expression of type-I collagen in the upper-left lip is higher compared with the upper-right lip. Magnification, ×400. GA, gestational age; IHC, immunohistochemistry.
Figure 8.Immunohistochemical analysis 72 h after model establishment in the GA16.5 and GA18.5 groups. (A and B) Ki67 staining of upper lip tissue from (A) the GA16.5 group and (B) the GA18.5 group. (C and D) CD31staining of upper lip tissue from (C) the GA16.5 group and (D) the GA18.5 group. (E and F) CK10 staining of upper lip tissue from (E) the GA16.5 group and (F) the GA18.5 group. (G) IOD values for Ki67, CD31 and CK10 staining in both groups. *P<0.05; ***P<0.001; ****P<0.0001. GA, gestational age; IOD, integral optical density.
Figure 9.Relative mRNA expression levels of TNF-α, IL-10 and TGF-β. ***P<0.001; ****P<0.0001. GA, gestational age.
Comparison of differentially expressed protein numbers between samples.
| Sample | Differentially expressed proteins, n | Upregulated proteins, n | Downregulated protein, n |
|---|---|---|---|
| Group 1 vs. Group 2 | 57 | 37 | 20 |
| Group 3 vs. Group 4 | 312 | 171 | 141 |
| Group 3 vs. Group 1 | 312 | 151 | 138 |
Group 1, upper-left lip without scar repair group at 72 h after modeling in GA16.5 rats; Group 2, upper-right lip normal group at 72 h after modeling in GA16.5 rats; Group 3, upper-left lip scar repair group at 72 h after modeling in GA18.5 rats; Group 4, upper-right lip normal group at 72 h after modeling in GA18.5 rats.
Differential protein expression in group 3 and group 1.
| Protein ID | Gene name | Protein name | P-value | Fold change |
|---|---|---|---|---|
| Q6jhy3 | Smgc | Submandibular gland protein c precursor | 0.001 | 753.286 |
| D3zge2 | Mpo | Myeloperoxidase precursor | 0.000 | 271.832 |
| Q62714 | Np4 | Neutrophil antibiotic peptide np-4 | 0.000 | 244.647 |
| D3zmi6 | Olfm4 | Olfactomedin-4 precursor | 0.000 | 189.639 |
| D3zy96 | Ngp | Neutrophilic granule protein precursor | 0.014 | 130.459 |
| B2ryb8 | Itgb2 | Integrin beta 2 precursor | 0.002 | 44.874 |
| G3v8l7 | Itgam | Integrin alpha-m precursor | 0.012 | 32.024 |
| Q6ig02 | Krt2 | Keratin, type ii cytoskeletal 2 epidermal | 0.011 | 26.577 |
| Q63015 | Csap1 | Common salivary protein 1 precursor | 0.003 | 26.571 |
| P50115 | S100a8 | S100 calcium binding protein a8 | 0.002 | 25.933 |
| P50116 | S100a9 | S100 calcium binding protein a9 | 0.001 | 19.538 |
| Q9jkb7 | Gda | Guanine deaminase | 0.023 | 19.076 |
| D3zd07 | Fmo9 | Flavin containing monooxygenase 9 pseudogene | 0.003 | 17.428 |
| Q5u1y2 | Rac2 | Ras-related c3 botulinum toxin substrate 2 | 0.011 | 12.859 |
| O54854 | Klk6 | Kallikrein-6 precursor | 0.000 | 10.614 |
| Q5u2v4 | Plbd1 | Phospholipase b-like 1 | 0.002 | 10.508 |
| Q6pdv1 | Lyz1 | Lysozyme c-1 precursor | 0.002 | 8.631 |
| Q4g075 | Serpinb1a | Leukocyte elastase inhibitor a | 0.001 | 8.260 |
| Q6ldz3 | Ptprc | Receptor-type tyrosine-protein phosphatase c | 0.023 | 8.077 |
| Q9wuq4 | Slpi | Secretory leukocyte peptidase inhibitor precursor | 0.007 | 7.093 |
| Q9erl1 | Cybb | Cytochrome b-245, beta polypeptide | 0.009 | 7.056 |
| E0a3n4 | Serpina3n | Serine protease inhibitor a3n | 0.013 | 7.049 |
| G3v6k1 | Tcn2 | Transcobalamin-2 precursor | 0.017 | 6.577 |
| P14669 | Anxa3 | Annexin a3 | 0.010 | 5.005 |
| P22985 | Xdh | Xanthine dehydrogenase/oxidase | 0.003 | 4.802 |
| Q91zn1 | Coro1a | Coronin-1a | 0.001 | 4.694 |
| P05982 | Nqo1 | Nad(p)h quinone dehydrogenase 1 | 0.001 | 4.334 |
| P23640 | Rab27a | Ras-related protein rab-27a | 0.019 | 3.830 |
| Q6ifu9 | Krt16 | Keratin, type i cytoskeletal 16 | 0.001 | 3.797 |
| Q62894 | Ecm1 | Extracellular matrix protein 1 | 0.039 | 3.655 |
| Q5×i38 | Lcp1 | Plastin-2 | 0.003 | 3.469 |
| P07150 | Anxa1 | Annexin a1 | 0.003 | 3.446 |
| Q78zr5 | Hopx | Homeodomain-only protein | 0.002 | 3.376 |
| P01015 | Agt | Angiotensinogen angiotensin-1 angiotensin-2 angiotensin-3 | 0.010 | 3.300 |
| Q6axy8 | Dhrs1 | Dehydrogenase/reductase sdr family member 1 | 0.006 | 3.287 |
| Q91w30 | Akr1b8 | Aldose reductase-related protein 2 | 0.007 | 3.244 |
| P32755 | Hpd | 4-hydroxyphenylpyruvate dioxygenase | 0.024 | 3.149 |
| Q499n7 | Ptpn6 | Tyrosine-protein phosphatase non-receptor type 6 | 0.038 | 3.025 |
| G3v755 | Sprr1a | Cornifin-a | 0.002 | 3.006 |
| Q5×fv4 | Fabp4 | Fatty acid-binding protein, adipocyte | 0.024 | 2.910 |
| B1wbv8 | Pld4 | Phospholipase d4 | 0.011 | 2.909 |
| D3zpf9 | Serpinb12 | Serpin b12 | 0.038 | 2.880 |
| Q4qqv6 | Lsp1 | Lymphocyte specific 1 | 0.001 | 2.665 |
| P29524 | Serpinb2 | Plasminogen activator inhibitor 2 type a | 0.001 | 2.653 |
| O55162 | Lypd3 | Ly6/plaur domain-containing protein 3 | 0.004 | 2.551 |
| D4a5u3 | Tgm3 | Protein-glutamine gamma-glutamyltransferase e protein | 0.033 | 2.547 |
| D3zsh7 | Col17a1 | Collagen alpha-1(xvii) chain | 0.002 | 2.485 |
| D3zjk2 | Serpinb3a | Protein serpinb3a | 0.038 | 2.445 |
| Q6ie17 | Stfa2l2 | Stefin-3 | 0.005 | 2.439 |
| Q5u206 | Calml3 | Calmodulin-like protein 3 | 0.013 | 2.429 |
| Q4v885 | Colec12 | Collectin-12 | 0.017 | 0.547 |
| D3zqi1 | Gpx7 | Glutathione peroxidase 7 precursor | 0.036 | 0.541 |
| D3z9m5 | Fkbp7 | Peptidyl-prolyl cis-trans isomerase fkbp7 precursor | 0.014 | 0.530 |
| O88201 | Clec11a | C-type lectin domain family 11 member a | 0.047 | 0.529 |
| D3zrd3 | Pde6d | Retinal rod rhodopsin-sensitive cgmp 3′,5′-cyclic phosphodiesterase subunit delta | 0.009 | 0.528 |
| P21807 | Prph | Peripherin | 0.008 | 0.527 |
| G3v6m4 | Capn6 | Calpain-6 | 0.024 | 0.514 |
| D3zg88 | Sssca1 | Sjogren syndrome/scleroderma autoantigen 1 homolog | 0.034 | 0.502 |
| Q2eja0 | Yap1 | Yorkie homolog | 0.002 | 0.494 |
| Q3b7u1 | Maged2 | Melanoma-associated antigen d2 | 0.003 | 0.492 |
| O35276 | Nrp2 | Neuropilin-2 | 0.015 | 0.491 |
| D3zun5 | Pofut2 | Gdp-fucose protein o-fucosyltransferase 2 precursor | 0.018 | 0.490 |
| P70583; d4a6v3 | Dut | Deoxyuridine 5′-triphosphate nucleotidohydrolase | 0.021 | 0.489 |
| P19527 | Nefl | Neurofilament light polypeptide | 0.026 | 0.479 |
| M0r649 | Exoc4 | Exocyst complex component 4 | 0.031 | 0.466 |
| Q99pd6 | Tgfb1i1 | Transforming growth factor beta-1-induced transcript 1 protein | 0.048 | 0.466 |
| P54001 | P4ha1 | Prolyl 4-hydroxylase subunit alpha-1 | 0.019 | 0.461 |
| D3zt07 | Sept5 | Septin-5 | 0.046 | 0.452 |
| P12839; g3v7s2 | Nefm | Neurofilament medium polypeptide | 0.020 | 0.444 |
| B5df50 | Galnt2 | Polypeptide n-acetylgalactosaminyltransferase 2 | 0.038 | 0.436 |
| D3zuq0 | Rilpl1 | Rilp-like protein 1 | 0.041 | 0.418 |
| D4a8h3 | Uba6 | Ubiquitin-like modifier-activating enzyme 6 | 0.024 | 0.415 |
| D4a9u4 | Eln | Elastin | 0.041 | 0.409 |
| D4ad75 | Dpy19l1 | Protein dpy-19 homolog 1 | 0.014 | 0.408 |
| Q6p7d4 | Cyp20a1 | Cytochrome p450 20a1 | 0.007 | 0.406 |
| Q5×i28 | Raver1 | Ribonucleoprotein ptb-binding 1 | 0.045 | 0.398 |
| P09117 | Aldoc | Fructose-bisphosphate aldolase c | 0.004 | 0.396 |
| D3zct5 | Pald1 | Paladin | 0.004 | 0.395 |
| A1l1k3 | Anapc5 | Anaphase-promoting complex subunit 5 | 0.028 | 0.392 |
| P62966 | Crabp1 | Cellular retinoic acid-binding protein 1 | 0.016 | 0.384 |
| Q569b7 | Rwdd4 | Rwd domain-containing protein 4 | 0.040 | 0.384 |
| Q5hze4 | Mri1 | Methylthioribose-1-phosphate isomerase | 0.011 | 0.376 |
| F1lqz3 | Kif3a | Kinesin family member 3a | 0.011 | 0.376 |
| O88752 | Hbe1 | Hemoglobin, epsilon 1 | 0.033 | 0.375 |
| Q5u1z0 | Rab3gap2 | Rab3 gtpase-activating protein non-catalytic subunit | 0.003 | 0.373 |
| A1a5r1 | Rbfox1 | Fox-1 homolog c | 0.033 | 0.366 |
| D4a845 | Rpa3 | Replication protein a 14 kda subunit | 0.021 | 0.366 |
| D3zwc6 | Sntb1 | Beta-1-syntrophin | 0.003 | 0.365 |
| G3v8m1 | Pold1 | Dna polymerase delta catalytic subunit | 0.003 | 0.353 |
| P23565 | Ina | Alpha-internexin | 0.039 | 0.352 |
| Q4klk9 | Ssu72 | Rna polymerase ii subunit a c-terminal domain phosphatase ssu72 | 0.025 | 0.349 |
| F1mah6 | Cdh11 | Cadherin 11 | 0.007 | 0.326 |
| Q6ayg3 | Prune | Prune homolog (drosophila) (ec:3.6.1.1) | 0.001 | 0.278 |
| P04638 | Apoa2 | Apolipoprotein a-ii | 0.010 | 0.270 |
| Q9z2z8 | Dhcr7 | 7-dehydrocholesterol reductase | 0.000 | 0.221 |
| Q10758 | Krt8 | Keratin, type ii cytoskeletal 8 | 0.002 | 0.214 |
| Q812d3 | Ppil3 | Peptidyl-prolyl cis-trans isomerase-like 3 | 0.000 | 0.188 |
| G3v8r3 | Hbz | Hemoglobin, zeta | 0.004 | 0.128 |
| B5dfl9 | Sestd1 | Sec14 and spectrin domains 1 | 0.000 | 0.065 |
| Q9eph1 | A1bg | Alpha-1b-glycoprotein | 0.016 | 0.033 |
Group 1, upper-left lip of fetus at 72 h after modeling in GA16.5 rats; Group 3, upper-left lip of fetus at 72 h after modeling in GA18.5 rats. GA, gestational age.
Figure 10.Volcano plot of the differentially expressed proteins in group 1 and group 2. Group 1, upper-left lip of fetus at 72 h after modeling in GA16.5 rats; Group 2, upper-right lip of fetus at 72 h after modeling in GA16.5 rats. GA, gestational age.
Figure 12.Volcano plot of the differentially expressed proteins in group 3 and group 1. Group 1, upper-left lip of fetus at 72 h after modeling in GA16.5 rats; Group 3, upper-left lip of fetus at 72 h after modeling in GA18.5 rats. GA, gestational age.
Figure 13.GO enrichment analysis of the differentially expressed proteins. GO enrichment analysis of the differentially expressed proteins in (A) group 1 and group 2, (B) in group 3 and group 4 and (C) in group 3 and group 1. GA, gestational age; GO, Gene Ontology; p.adjust, adjusted P-value. Group 1, upper-left lip of fetus at 72 h after modeling in GA16.5 rats; Group 2, upper-right lip of fetus at 72 h after modeling in GA16.5 rats; Group 3, upper-left lip of fetus at 72 h after modeling in GA18.5 rats; Group 4, upper-right lip of fetus at 72 h after modeling in GA18.5 rats. GA, gestational age.
Figure 14.KEGG pathway enrichment analysis of the differentially expressed proteins. KEGG pathway enrichment analysis of the differentially expressed proteins in (A) group 3 and group 4 and (B) in group 3 and group 1. GA, gestational age; KEGG, Kyoto Encyclopedia of Genes and Genomes; p.adjust, adjusted P-value. Group 1, upper-left lip of fetus at 72 h after modeling in GA16.5 rats; Group 2, upper-right lip of fetus at 72 h after modeling in GA16.5 rats; Group 3, upper-left lip of fetus at 72 h after modeling in GA18.5 rats; Group 4, upper-right lip of fetus at 72 h after modeling in GA18.5 rats. GA, gestational age.
Figure 15.Interaction network of differentially expressed proteins. Interaction network of differentially expressed proteins in (A) group 1 and group 2, (B) 3 and group 4 and (C) 3 and group 1. Group 1, upper-left lip of fetus at 72 h after modeling in GA16.5 rats; Group 2, upper-right lip of fetus at 72 h after modeling in GA16.5 rats; Group 3, upper-left lip of fetus at 72 h after modeling in GA18.5 rats; Group 4, upper-right lip of fetus at 72 h after modeling in GA18.5 rats. GA, gestational age.
Figure 16.RT-qPCR analysis of Smad4, Fabp5, S100a4, S100a8 and S100a9. RT-qPCR detection and amplification of (A) Smad4, (B) Fabp5, (C) S100a4, (D) S100a8 and (E) S100a9. The dissolution curves and relative mRNA expression levels are shown for each target. RT-qPCR, reverse transcription-quantitative PCR; Fabp5, fatty acid binding protein 5; Smad4, Smad family member 4; S100, S100 calcium binding protein. Group 1, upper-left lip of fetus at 72 h after modeling in GA16.5 rats; Group 2, upper-right lip of fetus at 72 h after modeling in GA16.5 rats; Group 3, upper-left lip of fetus at 72 h after modeling in GA18.5 rats; Group 4, upper-right lip of fetus at 72 h after modeling in GA18.5 rats. *P<0.05; **P<0.01. GA, gestational age.
Figure 17.Immunofluorescence analysis Smad4, Fabp5, S100a4, S100a8 and S100a9. (A and B) Smad4 staining of upper lip tissue from (A) the GA16.5 group and (B) the GA18.5 group. (C and D) Fabp5 staining of upper lip tissue from (C) the GA16.5 group and (D) the GA18.5 group. (E and F) S100a4 staining of upper lip tissue from (F) the GA16.5 group and (F) the GA18.5 group. (G and H) S100a8 staining of upper lip tissue from (G) the GA16.5 group and (H) the GA18.5 group. (I and J) S100a9 staining of upper lip tissue from (I) the GA16.5 group and (J) the GA18.5 group. (K) Relative IOD values for Smad4, Fabp5, S100a4, S100a8 and S100a9 staining. *P<0.05; **P<0.01; ***P>0.001. Fabp5, fatty acid binding protein 5; Smad4, Smad family member 4; S100, S100 calcium binding protein; IOD, integral optical density; GA, gestational age.
Differential protein expression in group 1 and group 2.
| Protein ID | Gene name | Protein name | P-value | Fold-change |
|---|---|---|---|---|
| G3V8R3 | Hbz | Hemoglobin, zeta | 0.004 | 7.788 |
| B2RYS8 | Ndufb8 | NADH dehydrogenase | 0.000 | 5.024 |
| Q920P6 | Ada | Adenosine deaminase | 0.038 | 4.831 |
| O88752 | Hbe1 | Hemoglobin, epsilon 1 | 0.003 | 4.801 |
| Q499N7 | Ptpn6 | Tyrosine-protein phosphatase non-receptor type 6 | 0.003 | 4.700 |
| Q4FZU2 | Krt6a | Keratin 6A | 0.001 | 4.044 |
| P06762 | Hmox1 | Heme oxygenase 1 | 0.011 | 3.902 |
| Q6IFU9 | Krt16 | Keratin, type I cytoskeletal 16 | 0.006 | 3.613 |
| Q99PD6 | Tgfb1i1 | Transforming growth factor beta-1-induced transcript 1 protein | 0.004 | 3.590 |
| Q6P7S1 | Asah1 | Acid ceramidase | 0.029 | 3.167 |
| Q63066 | Hbg1 | Hemoglobin, gamma A | 0.002 | 3.082 |
| Q10758 | Krt8 | Keratin, type II cytoskeletal 8 | 0.004 | 2.901 |
| Q6AYQ4 | Tmem109 | Transmembrane protein 109 | 0.048 | 2.710 |
| Q9Z2Q7 | Stx8 | Syntaxin-8 | 0.035 | 2.660 |
| G3V9M8 | Fam50a | Protein fam50a | 0.034 | 2.515 |
| M0R9Y3 | Nup43 | Nucleoporin 43 | 0.005 | 2.461 |
| B2GVB9 | Fermt3 | Fermitin family homolog 3 | 0.018 | 2.425 |
| G3V8H | Olfml3 | Olfactomedin-like protein 3 precursor | 0.045 | 2.383 |
| D4A531 | Polr2i | Rna polymerase ii subunit i | 0.049 | 2.290 |
| Q68FS1 | Nubp2 | Cytosolic Fe-S cluster assembly factor | 0.028 | 2.221 |
| D3ZLS5 | Hectd1 | Hect domain e3 ubiquitin protein ligase 1 | 0.033 | 2.112 |
| D4A0M2 | Nxn | Nucleoredoxin | 0.033 | 2.056 |
| Q6IE17 | Stfa2l2 | Stefin-3 | 0.007 | 1.969 |
| P27139 | Ca2 | Carbonic anhydrase 2 | 0.032 | 1.957 |
| D3ZF44 | LOC684499 | Protein LOC684499 | 0.015 | 1.940 |
| Q6LDZ3 | Ptprc | Receptor-type tyrosine-protein phosphatase C | 0.007 | 1.878 |
| Q5XI38 | Lcp1 | Plastin-2 | 0.018 | 1.843 |
| Q5PPG2 | Lgmn | Legumain precursor | 0.015 | 1.820 |
| P06765 | Pf4 | Platelet factor 4 | 0.050 | 1.708 |
| Q9R1T3 | Ctsz | Cathepsin Z | 0.011 | 1.707 |
| Q5U1Y2 | Rac2 | Ras-related C3 botulinum toxin substrate 2 | 0.021 | 1.669 |
| Q5U2V4 | Plbd1 | Phospholipase B-like 1 | 0.028 | 1.630 |
| Q9EPX0 | Hspb8 | Heat shock protein beta-8 | 0.005 | 1.603 |
| O35532 | Msmo1 | Methylsterol monooxygenase 1 | 0.037 | 1.592 |
| Q91ZN1 | Coro1a | Coronin-1A | 0.013 | 1.586 |
| O88201 | Clec11a | C-type lectin domain family 11 member A | 0.025 | 1.547 |
| Q5U329 | Slc4a1 | Band 3 anion transport protein | 0.027 | 1.512 |
| Q496Z5 | Prph | Peripherin | 0.041 | 0.626 |
| P19527 | Nefl | Neurofilament light polypeptide | 0.040 | 0.608 |
| Q9ESI7 | Dcx | Neuronal migration protein doublecortin | 0.003 | 0.597 |
| Q6AY98 | Ube2e2 | Ubiquitin conjugating enzyme e2 e2 | 0.046 | 0.577 |
| Q7TSX7 | Nr3c1;gr | Glucocorticoid receptor | 0.026 | 0.560 |
| O70437 | Smad4 | Mothers against decapentaplegic homolog 4 | 0.043 | 0.557 |
| F1M754 | Map4k4 | Mitogen-activated protein kinase kinase kinase kinase 4 | 0.022 | 0.526 |
| D4A2Z8 | Dhx36 | Probable ATP-dependent RNA helicase DHX36 | 0.009 | 0.522 |
| P31430 | Dpep1 | Dipeptidase 1 | 0.010 | 0.513 |
| Q6AXY8 | Dhrs1 | Dehydrogenase/reductase SDR family member 1 | 0.019 | 0.495 |
| D4A414 | Cox15 | COX15 homolog | 0.031 | 0.476 |
| D4ABV5 | Calm1 | Calmodulin 1 | 0.012 | 0.473 |
| D3ZRN3 | Actbl2 | Beta-actin-like protein 2 | 0.048 | 0.413 |
| Q8CGS4 | Chmp3 | Charged multivesicular body protein 3 | 0.022 | 0.410 |
| D3ZHA7 | Myl6b | Myosin light chain 6b | 0.011 | 0.390 |
| P70541 | Eif2b3 | Translation initiation factor eif-2B subunit gamma | 0.002 | 0.324 |
| D3ZX50 | Krtap11-1 | Uncharacterized protein | 0.037 | 0.287 |
| D3ZD07 | Fmo9 | Flavin containing monooxygenase 9 pseudogene | 0.007 | 0.277 |
| Q6IFX1 | Krt24 | Keratin, type I cytoskeletal 24 | 0.012 | 0.050 |
| Q6IG02 | Krt2 | Keratin, type II cytoskeletal 2 | 0.008 | 0.021 |
Group 1: Upper-left lip of fetus at 72 h after modeling in GA16.5 rats; Group 2, upper-right lip of fetus at 72 h after modeling in GA16.5 rats. GA, gestational age.
Differential protein expression in group 3 and group 4.
| Protein ID | Gene name | Protein name | P-value | Fold change |
|---|---|---|---|---|
| D3ZGE2 | Mpo | Myeloperoxidase | 0.000 | 377.923 |
| Q62714 | Np4 | Neutrophil antibiotic peptide NP-4 | 0.000 | 231.771 |
| D3ZY96 | Ngp | Neutrophilic granule protein precursor | 0.010 | 226.724 |
| P50115 | S100a8 | S100 Calcium Binding Protein A8 | 0.001 | 92.828 |
| Q7TP54 | Fam65b | Protein FAM65B | 0.000 | 77.718 |
| D3ZMI6 | Olfm4 | Olfactomedin-4 precursor | 0.001 | 63.833 |
| D4A081 | Setdb1 | Histone-lysine N-methyltransferase SETDB1 | 0.000 | 47.032 |
| Q9JI30 | Itgam | Integrin alpha-M precursor | 0.011 | 39.489 |
| B2RYB8 | Itgb2 | Integrin beta 2 precursor | 0.003 | 34.443 |
| P50116 | S100a9 | S100 Calcium Binding Protein A9 | 0.000 | 30.191 |
| Q920P6 | Ada | Adenosine deaminase | 0.028 | 27.433 |
| Q499N7 | Ptpn6 | Tyrosine-protein phosphatase non-receptor type 6 | 0.003 | 23.157 |
| Q9ERL1 | Cybb | Cytochrome b-245, beta polypeptide | 0.002 | 21.484 |
| Q9JKB7 | Gda | Guanine deaminase | 0.019 | 20.202 |
| Q5U1Y2 | Rac2 | Ras-related C3 botulinum toxin substrate 2 | 0.007 | 19.291 |
| Q6IFU9 | Krt16 | Keratin, type I cytoskeletal 16 | 0.001 | 13.524 |
| O54854 | Klk6 | Kallikrein-6 precursor | 0.000 | 11.605 |
| B2GVB9 | Fermt3 | Fermitin family homolog 3 | 0.012 | 11.176 |
| Q5PQW8 | Gbp2 | Interferon-induced guanylate-binding protein 2 | 0.019 | 10.854 |
| Q6LDZ3 | Ptprc | Receptor-type tyrosine-protein phosphatase C | 0.015 | 10.626 |
| Q4G075 | Serpinb1a | Leukocyte elastase inhibitor A | 0.001 | 9.051 |
| Q6PDV1 | Lyz1 | Lysozyme C-1 precursor | 0.002 | 9.049 |
| Q6IE17 | Stfa2l2 | Stefin-3 | 0.000 | 8.930 |
| Q5U2V4 | Plbd1 | Phospholipase B-like 1 | 0.003 | 8.669 |
| Q91ZN1 | Coro1a | Coronin-1A | 0.001 | 8.199 |
| P14669 | Anxa3 | Annexin A3 | 0.008 | 8.100 |
| Q9R0D6 | Tcn2 | Transcobalamin-2 precursor | 0.014 | 7.286 |
| Q4QQV6 | Lsp1 | Lymphocyte specific 1 | 0.004 | 6.785 |
| P06768 | Rbp2 | Retinol-binding protein 2 | 0.006 | 6.051 |
| Q5XI38 | Lcp1 | Plastin-2 | 0.001 | 5.841 |
| Q91W30 | Akr1b8 | Aldo-Keto Reductase Family 1 Member B8 | 0.001 | 5.492 |
| Q63015 | Csap1 | Common salivary protein 1 precursor | 0.001 | 5.454 |
| P31720 | C1qa | Complement C1q subcomponent subunit A | 0.008 | 5.339 |
| G3V904 | Pld4 | Phospholipase D4 | 0.005 | 4.857 |
| D4ADD7 | Glrx5 | Glutaredoxin-related protein 5 | 0.002 | 4.782 |
| P22985 | Xdh | Xanthine dehydrogenase/oxidase | 0.003 | 4.221 |
| P06866 | Hp | Haptoglobin Haptoglobin alpha chain Haptoglobin beta chain | 0.002 | 3.945 |
| B2RYS9 | Trmt112 | Uncharacterized protein | 0.016 | 3.827 |
| P23640 | Rab27a | Ras-related protein Rab-27A | 0.017 | 3.774 |
| P06762 | Hmox1 | Heme oxygenase 1 | 0.008 | 3.769 |
| Q9WUQ4 | Slpi | Secretory leukocyte peptidase inhibitor precursor | 0.015 | 3.710 |
| P07150 | Anxa1 | Annexin A1 | 0.003 | 3.449 |
| D3ZX79 | Ly6g6c | Lymphocyte antigen 6 complex G6C precursor | 0.018 | 3.236 |
| O88752 | Hbe1 | Hemoglobin, epsilon 1 | 0.029 | 3.211 |
| Q9R1T3 | Ctsz | Cathepsin Z | 0.002 | 3.195 |
| D3ZJH9 | Me2 | NAD-dependent malic enzyme, mitochondrial | 0.034 | 2.926 |
| P05942 | S100a4 | S100 Calcium Binding Protein A4 | 0.002 | 2.897 |
| Q5XJW6 | Cfh | Complement factor H precursor | 0.008 | 2.891 |
| O54892 | Hk2 | Hexokinase-2 | 0.007 | 2.876 |
| Q6P7D4 | Cyp20a1 | Cytochrome P450 20A1 | 0.013 | 0.490 |
| D3ZWC6 | Sntb1 | beta-1-syntrophin | 0.025 | 0.490 |
| Q62997 | Gfra1 | GDNF family receptor alpha-1 | 0.043 | 0.488 |
| P02600 | Myl1 | Myosin light chain 1/3 | 0.011 | 0.482 |
| O35878 | Hspb2 | Heat shock protein beta-2 | 0.005 | 0.481 |
| P17209 | Myl4 | Myosin light chain 4 | 0.004 | 0.475 |
| D4A8H3 | Uba6 | Ubiquitin-like modifier-activating enzyme 6 | 0.031 | 0.471 |
| A1L1K3 | Anapc5 | Anaphase-promoting complex subunit 5 | 0.046 | 0.470 |
| D3ZTW9 | Exog | Nuclease EXOG | 0.028 | 0.467 |
| D4A3D2 | Smyd1 | SET and MYND domain-containing protein 1 | 0.004 | 0.465 |
| P04466 | Mylpf | Myosin regulatory light chain 2 | 0.009 | 0.464 |
| P12847 | Myh3 | Myosin-3 | 0.007 | 0.461 |
| P13413 | Tnni1 | Troponin I | 0.001 | 0.460 |
| D4A4Y2 | Hsd17b14 | 17-beta-hydroxysteroid dehydrogenase 14 | 0.033 | 0.455 |
| P23928 | Cryab | Alpha-crystallin B chain | 0.020 | 0.454 |
| Q7TNB2 | Tnnt1 | Troponin T | 0.002 | 0.451 |
| D3ZCD7 | Tp53rk | TP53-regulating kinase | 0.004 | 0.450 |
| P00564 | Ckm | Creatine kinase M-type | 0.037 | 0.450 |
| Q80W59 | Hrc | Sarcoplasmic reticulum histidine-rich calcium-binding protein precursor | 0.019 | 0.445 |
| P50463 | Csrp3 | Cysteine and glycine-rich protein 3 | 0.013 | 0.444 |
| Q5XIG1 | Ldb3 | Ldb3 protein | 0.017 | 0.443 |
| D3ZUB7 | Anapc4 | Anaphase-promoting complex subunit 4 | 0.030 | 0.442 |
| Q64578 | Atp2a1 | ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 | 0.032 | 0.442 |
| Q6P792 | Fhl1 | Four and a half LIM domains protein 1 | 0.013 | 0.431 |
| Q8K4F2 | Alox15b | Arachidonate 15-lipoxygenase B | 0.025 | 0.428 |
| M0RBL8 | Tceal6 | Protein LOC679974 | 0.003 | 0.427 |
| P51868 | Casq2 | Calsequestrin-2 precursor | 0.008 | 0.425 |
| B4F789 | Apobec2 | Probable C->U-editing enzyme APOBEC-2 | 0.008 | 0.421 |
| P16290 | Pgam2 | Phosphoglycerate mutase 2 | 0.014 | 0.418 |
| Q9Z2J4 | Nexn | Nexilin | 0.002 | 0.412 |
| Q9QYU4 | Crym | Thiomorpholine-carboxylate dehydrogenase | 0.017 | 0.411 |
| D3ZUQ0 | Rilpl1 | RILP-like protein 1 | 0.006 | 0.409 |
| D4A2H6 | Rbfox3 | Fox-1 homolog C | 0.037 | 0.408 |
| D3ZVM5 | Hspa12b | Heat shock 70 kDa protein 12B | 0.038 | 0.406 |
| O54747 | Pold1 | DNA polymerase delta catalytic subunit | 0.001 | 0.403 |
| P52481 | Cap2 | Adenylyl cyclase-associated protein 2 | 0.007 | 0.396 |
| Q63544 | Sncg | Gamma-synuclein | 0.004 | 0.381 |
| Q496Z5 | Prph | Peripherin | 0.001 | 0.376 |
| P07483 | Fabp3 | Fatty acid-binding protein, heart | 0.011 | 0.357 |
| P23565 | Ina | Alpha-internexin | 0.005 | 0.332 |
| D4ADS4 | Mgst3 | Microsomal glutathione S-transferase 3 | 0.024 | 0.328 |
| P19527 | Nefl | Neurofilament light polypeptide | 0.006 | 0.326 |
| P12839 | Nefm | Neurofilament medium polypeptide | 0.004 | 0.326 |
| B2RZ77 | Dpt | Dermatopontin precursor | 0.024 | 0.320 |
| Q6AYG3 | Prune | Prune homolog | 0.017 | 0.320 |
| G3V7K1 | Myom2 | Myomesin 2 | 0.025 | 0.299 |
| G3V6V5 | Atp1b4 | Protein ATP1B4 | 0.005 | 0.272 |
| Q9Z2Z8 | Dhcr7 | 7-dehydrocholesterol reductase | 0.000 | 0.270 |
| P19633 | Casq1 | Calsequestrin-1 | 0.021 | 0.201 |
| D3ZX18 | Myoz2 | Myozenin-2 | 0.001 | 0.198 |
| Q812D3 | Ppil3 | Peptidyl-prolyl cis-trans isomerase-like 3 | 0.000 | 0.179 |
Group 3, upper-left lip of fetus at 72 h after modeling in GA18.5 rats; Group 4, upper-right lip of fetus at 72 h after modeling in GA18.5 rats. GA, gestational age.