Literature DB >> 34164630

As Easy as 1, 2… 4? Uncertainty in Counting Tasks for Medical Imaging.

Zach Eaton-Rosen1,2, Thomas Varsavsky1,2, Sebastien Ourselin2, M Jorge Cardoso2.   

Abstract

Counting is a fundamental task in biomedical imaging and count is an important biomarker in a number of conditions. Estimating the uncertainty in the measurement is thus vital to making definite, informed conclusions. In this paper, we first compare a range of existing methods to perform counting in medical imaging and suggest ways of deriving predictive intervals from these. We then propose and test a method for calculating intervals as an output of a multi-task network. These predictive intervals are optimised to be as narrow as possible, while also enclosing a desired percentage of the data. We demonstrate the effectiveness of this technique on histopathological cell counting and white matter hyperintensity counting. Finally, we offer insight into other areas where this technique may apply.

Entities:  

Year:  2019        PMID: 34164630      PMCID: PMC7611043          DOI: 10.1007/978-3-030-32251-9_39

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  4 in total

1.  Segmentation of Nuclei in Histopathology Images by Deep Regression of the Distance Map.

Authors:  Peter Naylor; Marick Lae; Fabien Reyal; Thomas Walter
Journal:  IEEE Trans Med Imaging       Date:  2019-02       Impact factor: 10.048

2.  Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge.

Authors:  Hugo J Kuijf; J Matthijs Biesbroek; Jeroen De Bresser; Rutger Heinen; Simon Andermatt; Mariana Bento; Matt Berseth; Mikhail Belyaev; M Jorge Cardoso; Adria Casamitjana; D Louis Collins; Mahsa Dadar; Achilleas Georgiou; Mohsen Ghafoorian; Dakai Jin; April Khademi; Jesse Knight; Hongwei Li; Xavier Llado; Miguel Luna; Qaiser Mahmood; Richard McKinley; Alireza Mehrtash; Sebastien Ourselin; Bo-Yong Park; Hyunjin Park; Sang Hyun Park; Simon Pezold; Elodie Puybareau; Leticia Rittner; Carole H Sudre; Sergi Valverde; Veronica Vilaplana; Roland Wiest; Yongchao Xu; Ziyue Xu; Guodong Zeng; Jianguo Zhang; Guoyan Zheng; Christopher Chen; Wiesje van der Flier; Frederik Barkhof; Max A Viergever; Geert Jan Biessels
Journal:  IEEE Trans Med Imaging       Date:  2019-03-19       Impact factor: 10.048

3.  Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks.

Authors:  Guotai Wang; Wenqi Li; Michael Aertsen; Jan Deprest; Sébastien Ourselin; Tom Vercauteren
Journal:  Neurocomputing       Date:  2019-02-07       Impact factor: 5.719

4.  NiftyNet: a deep-learning platform for medical imaging.

Authors:  Eli Gibson; Wenqi Li; Carole Sudre; Lucas Fidon; Dzhoshkun I Shakir; Guotai Wang; Zach Eaton-Rosen; Robert Gray; Tom Doel; Yipeng Hu; Tom Whyntie; Parashkev Nachev; Marc Modat; Dean C Barratt; Sébastien Ourselin; M Jorge Cardoso; Tom Vercauteren
Journal:  Comput Methods Programs Biomed       Date:  2018-01-31       Impact factor: 5.428

  4 in total
  1 in total

1.  Self-normalized density map (SNDM) for counting microbiological objects.

Authors:  Krzysztof M Graczyk; Jarosław Pawłowski; Sylwia Majchrowska; Tomasz Golan
Journal:  Sci Rep       Date:  2022-06-22       Impact factor: 4.996

  1 in total

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