Literature DB >> 34160805

In Vitro Silencing of lncRNAs Using LNA GapmeRs.

Elisa Taiana1,2, Vanessa Favasuli1,2, Domenica Ronchetti1,2, Eugenio Morelli3, Pierfrancesco Tassone4, Giuseppe Viglietto4, Nikhil C Munshi3, Antonino Neri5,6, Nicola Amodio4.   

Abstract

Despite substantial advancements have been achieved in the identification of long noncoding RNA (lncRNA) molecules, many challenges still remain into their functional characterization. Loss-of-function approaches are needed to study oncogenic lncRNAs, which appear more difficult to knock down by RNA interference as compared to mRNAs. In this chapter, we present a protocol based on the use of a novel class of antisense oligonucleotides, named locked nucleic acid (LNA) GapmeRs, to inhibit the oncogenic lncRNA NEAT1 in multiple myeloma cells. Overall, this approach holds many advantages, including its possible independence from delivery reagents as well as the capability to knock down lncRNAs even in hard-to-transfect suspension cells, like hematopoietic cells.

Entities:  

Keywords:  ASO; Electroporation; Gymnosis; LNA-GapmeR; Multiple myeloma cells; lncRNA; ncRNA

Year:  2021        PMID: 34160805     DOI: 10.1007/978-1-0716-1581-2_10

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  20 in total

Review 1.  Pharmacokinetics, biodistribution and cell uptake of antisense oligonucleotides.

Authors:  Richard S Geary; Daniel Norris; Rosie Yu; C Frank Bennett
Journal:  Adv Drug Deliv Rev       Date:  2015-02-07       Impact factor: 15.470

Review 2.  Long non-coding RNAs: insights into functions.

Authors:  Tim R Mercer; Marcel E Dinger; John S Mattick
Journal:  Nat Rev Genet       Date:  2009-03       Impact factor: 53.242

Review 3.  The Role of Non-coding RNAs in Oncology.

Authors:  Frank J Slack; Arul M Chinnaiyan
Journal:  Cell       Date:  2019-11-14       Impact factor: 41.582

Review 4.  Functional Classification and Experimental Dissection of Long Noncoding RNAs.

Authors:  Florian Kopp; Joshua T Mendell
Journal:  Cell       Date:  2018-01-25       Impact factor: 41.582

Review 5.  Antisense oligonucleotide pharmacokinetics and metabolism.

Authors:  Richard S Geary
Journal:  Expert Opin Drug Metab Toxicol       Date:  2009-04       Impact factor: 4.481

Review 6.  Biological activity and biotechnological aspects of locked nucleic acids.

Authors:  Karin E Lundin; Torben Højland; Bo R Hansen; Robert Persson; Jesper B Bramsen; Jørgen Kjems; Troels Koch; Jesper Wengel; C I Edvard Smith
Journal:  Adv Genet       Date:  2013       Impact factor: 1.944

Review 7.  Locked nucleic acid: modality, diversity, and drug discovery.

Authors:  Peter H Hagedorn; Robert Persson; Erik D Funder; Nanna Albæk; Sanna L Diemer; Dennis J Hansen; Marianne R Møller; Natalia Papargyri; Helle Christiansen; Bo R Hansen; Henrik F Hansen; Mads A Jensen; Troels Koch
Journal:  Drug Discov Today       Date:  2017-10-06       Impact factor: 7.851

Review 8.  Therapeutic Targeting of Long Non-Coding RNAs in Cancer.

Authors:  Gayatri Arun; Sarah D Diermeier; David L Spector
Journal:  Trends Mol Med       Date:  2018-02-12       Impact factor: 15.272

Review 9.  MALAT1: a druggable long non-coding RNA for targeted anti-cancer approaches.

Authors:  Nicola Amodio; Lavinia Raimondi; Giada Juli; Maria Angelica Stamato; Daniele Caracciolo; Pierosandro Tagliaferri; Pierfrancesco Tassone
Journal:  J Hematol Oncol       Date:  2018-05-08       Impact factor: 17.388

Review 10.  Chemistry, mechanism and clinical status of antisense oligonucleotides and duplex RNAs.

Authors:  Xiulong Shen; David R Corey
Journal:  Nucleic Acids Res       Date:  2018-02-28       Impact factor: 16.971

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  1 in total

Review 1.  Emerging Roles of Long Noncoding RNAs in Breast Cancer Epigenetics and Epitranscriptomics.

Authors:  Elżbieta Wanowska; Klaudia Samorowska; Michał Wojciech Szcześniak
Journal:  Front Cell Dev Biol       Date:  2022-07-05
  1 in total

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