| Literature DB >> 34159203 |
Narasimha M Beeraka1,2, SubbaRao V Tulimilli1, Medha Karnik1, Surya P Sadhu3, Rajeswara Rao Pragada3, Gjumrakch Aliev2,4,5,6, SubbaRao V Madhunapantula1,7.
Abstract
Severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) infection causes coronavirus disease-19 (COVID-19), which is characterized by clinical manifestations such as pneumonia, lymphopenia, severe acute respiratory distress, and cytokine storm. S glycoprotein of SARS-CoV-2 binds to angiotensin-converting enzyme II (ACE-II) to enter into the lungs through membrane proteases consequently inflicting the extensive viral load through rapid replication mechanisms. Despite several research efforts, challenges in COVID-19 management still persist at various levels that include (a) availability of a low cost and rapid self-screening test, (b) lack of an effective vaccine which works against multiple variants of SARS-CoV-2, and (c) lack of a potent drug that can reduce the complications of COVID-19. The development of vaccines against SARS-CoV-2 is a complicated process due to the emergence of mutant variants with greater virulence and their ability to invoke intricate lung pathophysiology. Moreover, the lack of a thorough understanding about the virus transmission mechanisms and complete pathogenesis of SARS-CoV-2 is making it hard for medical scientists to develop a better strategy to prevent the spread of the virus and design a clinically viable vaccine to protect individuals from being infected. A recent report has tested the hypothesis of T cell immunity and found effective when compared to the antibody response in agammaglobulinemic patients. Understanding SARS-CoV-2-induced changes such as "Th-2 immunopathological variations, mononuclear cell & eosinophil infiltration of the lung and antibody-dependent enhancement (ADE)" in COVID-19 patients provides key insights to develop potential therapeutic interventions for immediate clinical management. Therefore, in this review, we have described the details of rapid detection methods of SARS-CoV-2 using molecular and serological tests and addressed different therapeutic modalities used for the treatment of COVID-19 patients. In addition, the current challenges against the development of vaccines for SARS-CoV-2 are also briefly described in this article.Entities:
Year: 2021 PMID: 34159203 PMCID: PMC8168478 DOI: 10.1155/2021/8160860
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Figure 1Schematic representation of the structure of SARS-CoV-2: SARS-CoV-2 is an enveloped virus containing RNA genome. The envelope contains spike (S) protein, nucleocapsid (N) protein, envelope protein (E), and membrane protein (M).
List of rapid methods used for detecting SARS-CoV-2.
| Diagnostic tests | Mechanism | Sample | Advantages | Limitations |
|---|---|---|---|---|
| Direct tests | ||||
| RT-PCR | SARS-CoV-2-specific hybridization probes are used to target envelope (E), RNA-dependent RNA polymerase (RdRp), and ORF1b and N regions of the virus. This test can detect the virus at least after two days after infection | Upper respiratory tract (URT) and lower respiratory tract (LRT) specimens | This test is a gold standard method for the diagnosis in symptomatic and asymptomatic patients. This test has a high sensitivity (~89%) and specificity (99%) | Needs infrastructure, very expensive, and requires qualified personnel |
| Reverse transcription loop-mediated isothermal amplification | Exponential amplification of virus-specific genes at a constant temperature | URT and LRT specimens | High sensitivity and specificity | Needs infrastructure, very expensive, and requires trained personnel |
| Nucleoprotein (NP) antigen detection test | Enzyme-linked immunoassay has a microplate precoated with specific antibodies against SARS-CoV-2 NP and the use of horseradish peroxidase- (HRP-) labeled secondary antibody | URT and LRT specimens and saliva | Simple and rapid technique. No trained personnel and expensive laboratory instruments are required | Less sensitivity (70-86%) and specificity (95-97%) when compared to RT-PCR |
| Indirect tests | ||||
| ELISA | Detects anti-SARS-CoV-2 IgG and IgM by identifying antibodies against the NP and spike proteins | Serum, plasma, whole blood | Widely used technique, inexpensive, easy sample collection, and high sensitivity (~82%) and high specificity (97%) | Needs infrastructure and trained personnel |
| Chemiluminescent immunoassay | Light-producing chemical reactions estimate the titers of IgG and IgM by the amount of the emitted luminous signal | Serum, plasma, whole blood | High-throughput and sensitive (77.9%) technique | Needs infrastructure and trained personnel |
| Rapid detection kits | Device with colloidal gold-labeled SARS-CoV-2 recombinant protein and murine anti-human IgG antibodies | Fingerpick blood samples | No need of infrastructure, easy sample collection results in 10-15 min | Low sensitivity (~88.6%) and specificity (~90.63%) |
Even though several detection methods have been developed, RT-PCR is considered as the gold standard for detection of SARS-CoV-2. The details presented in the table show various diagnostic approaches that have been developed in the detection of SARS-CoV-2.
List of various sampling methods currently in the usage for SARS-CoV-2 detection.
| Type of specimen used for COVID-19 testing | Stage of sample collection | Description |
|---|---|---|
| Upper respiratory specimens: nasopharyngeal and oropharyngeal swabs | Early-stage infections (asymptomatic or mild cases) | Individual nasopharyngeal swabs are reported to be more reliable [ |
| Lower respiratory specimens: sputum, endotracheal aspirate, bronchoalveolar lavage | Later in the course of the disease, the individuals with strong clinical suspicion of COVID-19 test negative with URT sampling [ | Sputum is not recommended because of an increase in aerosol transmission [ |
| Oral fluid collection methods | Individuals with clinical symptoms tested negative for URT | Less invasive and lower risk of exposure to other upon collection, when compared with the collection of URT specimens, therefore suitable for mass screening |
| Serum specimens | One collected in the acute phase and the other in the convalescent phase (2-4weeks) | Considered when nucleic acid amplification tests negative |
| Fecal specimens | Second week after the onset of symptoms | Considered when there is clinical suspicion of COVID-19, but URT and LRT are negative [ |
| Postmortem specimens (postmortem swabs, needle biopsy, or tissue specimen) | Collected during autopsy | For pathological and microbiological testing [ |
URT: upper respiratory tract; LRT: lower respiratory tract; WHO: World Health Organization.
Key molecular targets of pharmacological agents tested against SARS-CoV-2.
| Drugs | Target | Description |
|---|---|---|
| Remdesivir | RNA-dependent RNA polymerase enzyme | Used in the treatment of individuals with mild-to-moderate COVID-19 [ |
| Tocilizumab | Interleukin-6 (IL-6) | Used in the treatment of severe cytokine release syndrome |
| Hydroxychloroquine | Target the binding of S protein to ACE2 receptor [ | HCQ did not effectively prevent COVID-19 infections as it could not slow down the disease progression, pneumonia, acute respiratory distress, and death |
| Lopinavir/ritonavir | 3CLpro-CoV protease cleaves polyproteins during viral replication and assembly | The combination is used in the treatment of mild, moderate, and severe COVID-19 infection by suppressing the viral load [ |
| Favipiravir | RNA-dependent RNA polymerase enzyme | Inhibits viral RNA synthesis; more clinical validations are required |
| Triazavirin | RNA-dependent RNA polymerase enzyme | Inhibits viral RNA synthesis; more clinical validations are required |
| Umifenovir | Blocks the viral entry to the host | Showed no effect in reducing viral load in COVID-19 patients |
| Corticosteroids—dexamethasone | Proinflammatory genes coding cytokines, chemokines, cell adhesion molecules, inflammatory enzymes, and receptors [ | Recommended for patients with severe COVID-19; reduces lung inflammation, duration of mechanical ventilation, and mortality [ |
Figure 2The mechanism of action of umifenovir, lopinavir/ritonavir, remdesivir, favipiravir, triazavirin, and hydroxychloroquine in the treatment of SARS-CoV-2-mediated pathophysiology.
Figure 3The process of antibody-dependent enhancement (ADE) in lung cells. Entry of SARS-CoV-2, which is mediated by ACE-2 receptors on lung cells, further actuates inflammatory cascades through the production of pathogen-specific antibodies followed by ADE. ADE consequently induces lung pathology through the engagement with Fc receptors expressed on several immune cells, viz., monocytes and macrophages. Internalization of ADE-induced immune cascades can foster inflammation and tissue damage by modulating the inflammatory factors in lung cells.
Figure 4Sequence of events involved in SARS-CoV-2-induced Th2 immunopathology: antibody-bound SARS-CoV-2 virion interacts with the FcγR of host monocytes/macrophages. Virus-infected macrophages are not only responsible for various complications of the disease but also interact with T cells of lymphoid tissues in the host, which leads to the aggravated inflammatory responses which were reported in COVID-19.
Current stage of vaccines and their manufacturer.
| Types of vaccine | Vaccine name | Phase | Manufacturer | Country of origin |
|---|---|---|---|---|
| mRNA vaccine | mRNA1273 | Phase 3 | Moderna | US |
| Comirnaty | Phase 2/3 | Pfizer-BioNtech | Multinational | |
| Protein subunits | EpiVacCorona | Phase 3 | Vector Institute | Russia |
| NUX-CoV2373 | Phase 3 | Novavax | Australia | |
| Inactivated virus | BBIBP-CorV | Phase 3 | Sinopharm | China |
| CoronaVac | Phase 3 | Sinovac | China | |
| Name not announced | Phase 3 | Sinopharm-Wuhan | China | |
| Covaxin | Phase 3 | Bharat Biotech | India | |
| DNA-based vaccine | Convidecia | Phase 3 | CanSino | China |
| JNJ-78436735 | Phase 3 | Johnson & Johnson | The Netherlands, US | |
| Sputnik V | Phase 3 | Gamaleya | Russia | |
| Covishield (AZD1222) | Phase 2/3 | Oxford-AstraZeneca | UK |
Figure 5Schematic depiction of the four different kinds of vaccines, viz., nonreplicating viral vector vaccine, mRNA-based vaccine, inactivated virus vaccine, and protein subunit-based vaccine.