Literature DB >> 34148162

Bacterial diversity and their metabolic profiles in the sedimentary environments of Ny-Ålesund, Arctic.

Femi Anna Thomas1,2, Mahesh Mohan3, K P Krishnan4.   

Abstract

Sedimentary environments in the Arctic are known to harbor diverse microbial communities playing a crucial role in the remineralization of organic matter and associated biogeochemical cycles. In this study, we used a combination of culture-dependent and culture-independent approaches to understanding the bacterial community composition associated with the sediments of a terrestrial versus fjord system in the Svalbard Arctic. Community-level metabolic profiling and growth response of retrieved bacterial isolates towards different carbon substrates at varying temperatures were also studied to assess the metabolic response of communities and isolates in the system. Bacterial species belonging to Cryobacterium and Psychrobacter dominated the terrestrial and fjord sediment retrievable fraction. Amplicon sequencing analysis revealed higher bacterial diversity in the terrestrial sediments (Shannon index; 8.135 and 7.935) as compared to the fjord sediments (4.5-5.37). Phylum Proteobacteria and Bacteroidetes dominated both terrestrial and fjord sediments. Phylum Verrucomicrobia and Cyanobacteria were abundant in terrestrial sediments while Epsilonbacteraeota and Fusobacteriia dominated the fjord sediments. Significant differences were observed in the carbon substrate utilization profiles between the terrestrial and fjord sediments at both 4 °C and 20 °C incubations (p < 0.005). Utilization of N-acetyl-D-glucosamine, D-mannitol and Tween-80 by the sediment communities and bacterial isolates from both systems, irrespective of their temperature incubations implies the affinity of bacteria for such substrates as energy sources and for their survival in cold environments. Our results suggest the ability of sediment bacterial communities to adjust their substrate utilization profiles according to condition changes in the ecosystems and are found to be less influenced by their phylogenetic relatedness.

Entities:  

Keywords:  Amplicon sequencing; Community-level metabolic profiling; Culture-dependent; Fjord; Growth response; Terrestrial

Year:  2021        PMID: 34148162     DOI: 10.1007/s10482-021-01604-9

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  33 in total

1.  Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter.

Authors:  M T Cottrell; D L Kirchman
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

2.  Possible interactions between bacterial diversity, microbial activity and supraglacial hydrology of cryoconite holes in Svalbard.

Authors:  Arwyn Edwards; Alexandre M Anesio; Sara M Rassner; Birgit Sattler; Bryn Hubbard; William T Perkins; Michael Young; Gareth W Griffith
Journal:  ISME J       Date:  2010-07-22       Impact factor: 10.302

3.  Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization.

Authors:  J L Garland; A L Mills
Journal:  Appl Environ Microbiol       Date:  1991-08       Impact factor: 4.792

4.  Substrate utilization profiles of bacterial strains in plankton from the River Warnow, a humic and eutrophic river in north Germany.

Authors:  Heike M Freese; Anja Eggert; Jay L Garland; Rhena Schumann
Journal:  Microb Ecol       Date:  2010-01       Impact factor: 4.552

Review 5.  Psychrophilic lifestyles: mechanisms of adaptation and biotechnological tools.

Authors:  Tony Collins; Rosa Margesin
Journal:  Appl Microbiol Biotechnol       Date:  2019-02-07       Impact factor: 4.813

6.  Why does Escherichia coli grow more slowly on glucosamine than on N-acetylglucosamine? Effects of enzyme levels and allosteric activation of GlcN6P deaminase (NagB) on growth rates.

Authors:  Laura I Alvarez-Añorve; Mario L Calcagno; Jacqueline Plumbridge
Journal:  J Bacteriol       Date:  2005-05       Impact factor: 3.490

7.  Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Authors:  Evan Bolyen; Jai Ram Rideout; Matthew R Dillon; Nicholas A Bokulich; Christian C Abnet; Gabriel A Al-Ghalith; Harriet Alexander; Eric J Alm; Manimozhiyan Arumugam; Francesco Asnicar; Yang Bai; Jordan E Bisanz; Kyle Bittinger; Asker Brejnrod; Colin J Brislawn; C Titus Brown; Benjamin J Callahan; Andrés Mauricio Caraballo-Rodríguez; John Chase; Emily K Cope; Ricardo Da Silva; Christian Diener; Pieter C Dorrestein; Gavin M Douglas; Daniel M Durall; Claire Duvallet; Christian F Edwardson; Madeleine Ernst; Mehrbod Estaki; Jennifer Fouquier; Julia M Gauglitz; Sean M Gibbons; Deanna L Gibson; Antonio Gonzalez; Kestrel Gorlick; Jiarong Guo; Benjamin Hillmann; Susan Holmes; Hannes Holste; Curtis Huttenhower; Gavin A Huttley; Stefan Janssen; Alan K Jarmusch; Lingjing Jiang; Benjamin D Kaehler; Kyo Bin Kang; Christopher R Keefe; Paul Keim; Scott T Kelley; Dan Knights; Irina Koester; Tomasz Kosciolek; Jorden Kreps; Morgan G I Langille; Joslynn Lee; Ruth Ley; Yong-Xin Liu; Erikka Loftfield; Catherine Lozupone; Massoud Maher; Clarisse Marotz; Bryan D Martin; Daniel McDonald; Lauren J McIver; Alexey V Melnik; Jessica L Metcalf; Sydney C Morgan; Jamie T Morton; Ahmad Turan Naimey; Jose A Navas-Molina; Louis Felix Nothias; Stephanie B Orchanian; Talima Pearson; Samuel L Peoples; Daniel Petras; Mary Lai Preuss; Elmar Pruesse; Lasse Buur Rasmussen; Adam Rivers; Michael S Robeson; Patrick Rosenthal; Nicola Segata; Michael Shaffer; Arron Shiffer; Rashmi Sinha; Se Jin Song; John R Spear; Austin D Swafford; Luke R Thompson; Pedro J Torres; Pauline Trinh; Anupriya Tripathi; Peter J Turnbaugh; Sabah Ul-Hasan; Justin J J van der Hooft; Fernando Vargas; Yoshiki Vázquez-Baeza; Emily Vogtmann; Max von Hippel; William Walters; Yunhu Wan; Mingxun Wang; Jonathan Warren; Kyle C Weber; Charles H D Williamson; Amy D Willis; Zhenjiang Zech Xu; Jesse R Zaneveld; Yilong Zhang; Qiyun Zhu; Rob Knight; J Gregory Caporaso
Journal:  Nat Biotechnol       Date:  2019-08       Impact factor: 54.908

8.  Year-round measurements of size-segregated low molecular weight organic acids in Arctic aerosol.

Authors:  Matteo Feltracco; Elena Barbaro; Andrea Spolaor; Marco Vecchiato; Alice Callegaro; François Burgay; Massimiliano Vardè; Niccolò Maffezzoli; Federico Dallo; Federico Scoto; Roberta Zangrando; Carlo Barbante; Andrea Gambaro
Journal:  Sci Total Environ       Date:  2020-10-14       Impact factor: 7.963

Review 9.  Climate change impacts on wildlife in a High Arctic archipelago - Svalbard, Norway.

Authors:  Sébastien Descamps; Jon Aars; Eva Fuglei; Kit M Kovacs; Christian Lydersen; Olga Pavlova; Åshild Ø Pedersen; Virve Ravolainen; Hallvard Strøm
Journal:  Glob Chang Biol       Date:  2016-06-28       Impact factor: 10.863

10.  Global distribution of Polaromonas phylotypes--evidence for a highly successful dispersal capacity.

Authors:  John L Darcy; Ryan C Lynch; Andrew J King; Michael S Robeson; Steven K Schmidt
Journal:  PLoS One       Date:  2011-08-29       Impact factor: 3.240

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