Literature DB >> 34140335

Mismatch repair-deficient prostate cancer with parenchymal brain metastases treated with immune checkpoint blockade.

Laura A Sena1,2, Daniela C Salles1, Elizabeth L Engle2,3, Qingfeng Zhu1, Hanna Tukachinsky4, Tamara L Lotan1, Emmanuel S Antonarakis1,2.   

Abstract

Parenchymal brain metastases from prostate cancer are unusual and are associated with poor prognosis. Given the rarity of this entity, little is known about its molecular and histologic characteristics. Here we describe a patient with metastatic castration-resistant, mismatch repair-deficient (dMMR) prostate cancer with parenchymal brain metastases. Analysis of a brain metastasis revealed MLH1 loss consistent with dMMR, yet few tumor-infiltrating lymphocytes (TILs). He was treated with immune checkpoint blockade (ICB) and exhibited an extra-central nervous system (CNS) systemic response but CNS progression. Subsequent assessment of a brain metastasis following ICB treatment surprisingly showed increased TIL density and depletion of macrophages, suggestive of an enhanced antitumor immune response. Post-treatment tumoral DNA sequencing did not reveal acquired mutations that might confer resistance to ICB. This is the first description of ICB therapy for a patient with prostate cancer with parenchymal brain metastases, with pre- and post-treatment immunogenomic analyses.
© 2021 Sena et al.; Published by Cold Spring Harbor Laboratory Press.

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Keywords:  prostate cancer

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Year:  2021        PMID: 34140335      PMCID: PMC8327884          DOI: 10.1101/mcs.a006094

Source DB:  PubMed          Journal:  Cold Spring Harb Mol Case Stud        ISSN: 2373-2873


INTRODUCTION

Prostate cancer most frequently metastasizes to bone, lymph nodes, liver, and lung (Gandaglia et al. 2014). Metastases to the central nervous system (CNS) are rare. A retrospective study of patients with prostate cancer seen at MD Anderson Cancer Center from 1944 to 1998 estimated the incidence of brain metastases to be 0.6% (Tremont-Lukats et al. 2003). Even among men who die from prostate cancer, the rate of brain metastases has been reported to be in the range of 2% to 4% in autopsy studies (Catane et al. 1976; Saitoh et al. 1984). This is in contrast to other common malignancies such as lung, breast, and colon cancers, which are estimated to have incidences of brain metastases of 39%–56%, 15%–30%, and 3%–8%, respectively (Nayak et al. 2012). In prostate cancer, brain metastases are almost always associated with heavily pretreated, widely metastatic, castration-resistant disease (Mota et al. 2019). In fact, isolated metastasis of prostate cancer to the brain parenchyma has only been reported in the literature four times (Lewis 1967; Smith et al. 1980; Gupta et al. 1994; Sutton et al. 1996). Why prostate cancer generally fails to produce brain metastases is an unanswered question; however, the association of brain metastases with advanced disease may suggest that the tumor or immune system must undergo adaptation to allow these cancer cells to enter, survive, and/or grow in the CNS. Once brain metastases develop from prostate cancer, the prognosis is poor, with survival being on the order of 2–6 mo (Hatzoglou et al. 2014; Mota et al. 2019). Given the rarity of prostate cancer with brain metastases, little is known about its molecular characteristics and its interaction with the immune microenvironment. Initial studies suggested that PTEN loss and DNA homologous repair (HR) mutations may be common in this entity (Mota et al. 2019; Rodriguez et al. 2020); however, relatively few tumors have undergone DNA sequencing to date. Moreover, the immune cell composition of brain metastases from prostate cancer has not previously been described. Here we present a patient with metastatic castration-resistant prostate cancer (mCRPC) with brain metastases, whose tumor was found to have DNA mismatch repair deficiency (dMMR) with few CD8+ tumor-infiltrating lymphocytes (TILs) but abundant macrophages. Given the efficacy of immune checkpoint blockade in cancers of varying primary histology with dMMR (Le et al. 2017), the patient was treated with the anti-PD1 antibody pembrolizumab. We describe the clinical and immunogenomic features of this patient.

RESULTS

Case Description

A 60-yr-old man was found to have a prostate-specific antigen (PSA) level of 15.3 ng/mL and was subsequently diagnosed with localized prostate adenocarcinoma with Gleason score 4 + 5 = 9. He underwent primary external-beam radiotherapy with concurrent androgen-deprivation therapy that was planned for 2 yr. However, 18 mo after radiation was completed, he was found to have a rising PSA level despite castrate levels of testosterone and was deemed to have castration-resistant prostate cancer (CRPC). Imaging studies revealed bone metastases and retroperitoneal lymphadenopathy. He was treated with sipuleucel-T immunotherapy, followed by abiraterone and prednisone, but developed disease progression after 8 mo. At that time, he developed slurred speech and difficulty recalling names and performing complex business planning. Magnetic resonance imaging (MRI) of the brain revealed more than 15 parenchymal brain lesions (Fig. 1A,B).
Figure 1.

Parenchymal brain metastases from prostate cancer. (A) Brain magnetic resonance imaging (MRI) axial view of T1 contrast-enhanced image demonstrates several parenchymal brain lesions. (B) Corresponding axial view of T2-FLAIR (T2-weighted fluid attenuated inversion recovery) image demonstrates surrounding vasogenic edema. (C) Post-treatment with pembrolizumab, MRI axial view of T1 contrast-enhanced image suggests enlargement of parenchymal brain lesions. (D) Post-treatment with pembrolizumab, corresponding axial view of T2-FLAIR image demonstrates surrounding vasogenic edema.

Parenchymal brain metastases from prostate cancer. (A) Brain magnetic resonance imaging (MRI) axial view of T1 contrast-enhanced image demonstrates several parenchymal brain lesions. (B) Corresponding axial view of T2-FLAIR (T2-weighted fluid attenuated inversion recovery) image demonstrates surrounding vasogenic edema. (C) Post-treatment with pembrolizumab, MRI axial view of T1 contrast-enhanced image suggests enlargement of parenchymal brain lesions. (D) Post-treatment with pembrolizumab, corresponding axial view of T2-FLAIR image demonstrates surrounding vasogenic edema. Given the rarity of parenchymal brain metastases from prostate cancer, the patient underwent diagnostic and therapeutic craniotomy with excision of the two largest brain tumors, with pathology confirming metastatic prostatic adenocarcinoma with extensive necrosis (Fig. 2A). Multispectral immunofluorescence and immunohistochemical studies revealed a paucity of CD8+ TILs (Fig. 2C,E) and abundant CD163+ macrophages in the initial tissue sample (Fig. 2G). The patient then received postoperative stereotactic radiation therapy to 14 separate brain metastases and was concurrently started on enzalutamide.
Figure 2.

Pathologic response to immune checkpoint blockade (ICB). (A) Hematoxylin and eosin (H&E) image of pretreatment sample demonstrates large, solid tumor nests. (B) H&E image of post-treatment sample demonstrates smaller tumor cells arranged in smaller nests. (C) Multiplex immunofluorescence (mIF) image of pretreatment sample showing CD8 (yellow), CD68 (orange), PD1 (aqua), and DAPI (blue) staining. Epithelial regions are manually annotated for analysis (yellow lines) using HALO software with some areas excluded from analysis (dotted white lines). (D) mIF image of post-treatment sample showing CD8 (yellow), CD68 (orange), PD1 (aqua), and DAPI (blue) staining. (E) Immunohistochemistry for CD8 in pretreatment sample shows lymphocytes mainly in stromal regions and excluded from tumor areas (arrow). (F) Immunohistochemistry for CD8 in post-treatment sample shows lymphocytes admixed with tumor cells (arrow). (G) Immunohistochemistry for CD163 in pretreatment sample demonstrates abundant macrophages in tumor and stromal areas. (H) Immunohistochemistry for CD163 in post-treatment sample shows only rare macrophages.

Pathologic response to immune checkpoint blockade (ICB). (A) Hematoxylin and eosin (H&E) image of pretreatment sample demonstrates large, solid tumor nests. (B) H&E image of post-treatment sample demonstrates smaller tumor cells arranged in smaller nests. (C) Multiplex immunofluorescence (mIF) image of pretreatment sample showing CD8 (yellow), CD68 (orange), PD1 (aqua), and DAPI (blue) staining. Epithelial regions are manually annotated for analysis (yellow lines) using HALO software with some areas excluded from analysis (dotted white lines). (D) mIF image of post-treatment sample showing CD8 (yellow), CD68 (orange), PD1 (aqua), and DAPI (blue) staining. (E) Immunohistochemistry for CD8 in pretreatment sample shows lymphocytes mainly in stromal regions and excluded from tumor areas (arrow). (F) Immunohistochemistry for CD8 in post-treatment sample shows lymphocytes admixed with tumor cells (arrow). (G) Immunohistochemistry for CD163 in pretreatment sample demonstrates abundant macrophages in tumor and stromal areas. (H) Immunohistochemistry for CD163 in post-treatment sample shows only rare macrophages. Next-generation DNA sequencing of his resected brain tumor (FoundationOne CDx) revealed multiple genomic alterations including MLH1 homozygous deletion with microsatellite instability (MSI-high) and a tumor mutational burden of 25 mutations/Mb, indicating dMMR (Table 1; Supplemental Table S1). The patient's tumor frameshift mutation burden was 11.25 mutations/Mb, and frameshift mutation proportion was 22%. Immunohistochemistry for the four mismatch repair proteins showed loss of MLH1 and its binding partner PMS2, with intact expression of MSH2 and MSH6 (Supplemental Fig. S1). He was noted to have a family history of prostate cancer in his father and breast cancer in his sister; however, germline genetic testing using an 84-gene panel (Invitae) was negative for pathogenic germline mutations.
Table 1.

Next-generation DNA sequencing of brain tumor specimens (FoundationOne CDx, Cambridge, MA) collected before and after pembrolizumab therapy

Gene/BiomarkerLocationPre-ICB brain metastasis biomarker status or HGVS reference (DNA; Protein)Post-ICB brain metastasis biomarker status or HGVS reference (DNA; Protein)
Microsatellite statusNAMSI-highMSI-high
Tumor mutational burdenNA25 mutations/Mb29 mutations/Mb
Tumor FS mutational burdenNA10 mutations/Mb11 mutations/Mb
Tumor FS proportionNA22%24%
MLH1Chromosome 3, NC_000003.12Homozygous lossHomozygous loss
APCChromosome 5, NC_000005.10c.4393_4394delAG; p.S1465fs*3c.4393_4394delAG; p.S1465fs*3
APCChromosome 5, NC_000005.10c.5362C > T; p.R1788Cc.5362C > T; R1788C
AXIN1Chromosome 16, NC_000016.10c.1602C > A; p.H534QNot detected
ARID1AChromosome 1, NC_000001.11c.3402_3403delTC; p.P1135fs*57c.3402_3403delTC; p.P1135fs*57
ASXL1Chromosome 20, NC_000020.11c.1934_1935insG; p.G646fs*12c.1934_1935insG; p.G646fs*12
BCORL1Chromosome X, NC_000023.11c.5042delC; p. P1681fs*20c.5042delC; p. P1681fs*20
CCND3Chromosome 6, NC_000006.12Not detectedc.869T > A; p.I290K
CD79AChromosome 19, NC_000019.10Not detectedc.205G > A; p.V69I
CDKN2AChromosome 9, NC_000009.12Homozygous lossHomozygous loss
CDKN2BChromosome 9, NC_000009.12Homozygous lossHomozygous loss
CICChromosome 19, NC_000019.10c.4790delC; p.P1597fs*23c.4790delC; p.P1597fs*23
CICChromosome 19, NC_000019.10c.3554C > T; p.A1185Vc.3554C > T; p.A1185V
FAM46CChromosome 1, NC_000001.11c.694G > A; p.A232TNot detected
JAK1Chromosome 1, NC_000001.11c.1289_1290insC; p.L431fs*22c.1289_1290insC; p.L431fs*22
JAK1Chromosome 1, NC_000001.11c.2842 + 2T > G; p.splice site 2842 + 2T > Gc.2842 + 2T > G splice site mutation; p.splice site 2842 + 2T > G
KDM5CChromosome X, NC_000023.11c.3447C > T; p.A1149TNot detected
MAP2K4Chromosome 17, NC_000017.11c.633 + 2T > A; p.splice site 633 + 2T > Ac.633 + 2T > A; p.splice site 633 + 2T > A
MLL2Chromosome 12, NC_000012.12c.15640C > T, p.R5214CNot detected
MTAPChromosome 9, NC_000009.12Homozygous lossHomozygous loss
NF1Chromosome 17, NC_000017.11c.7595C > T; p.A2532Vc.7595C > T; p.A2532V
NFKBIAChromosome 14, NC_000014.9Not detectedc.560T > C; p.L187P
PIK3CBChromosome 3, NC_000003.12c.1810delC; p.R604fs*4c.1810delC; p.R604fs*4
PBRM1Chromosome 3, NC_000003.12c.2101A > T; p.K701*c.2101A > T; p.K701*
PBRM1Chromosome 3, NC_000003.12c.2727A > C; p.K909Nc.2727A > C; p.K909N
PTENChromosome 10, NC_000010.11c.802-3_802-1TAG > AA; p. splice site 802-3_802-1TAG > AAc.802-3_802-1TAG > AA; p.splice site 802-3_802-1TAG > AA
PTENChromosome 10, NC_000010.11c.209 + 2T > C; p.splice site 209 + 2T > Cc.209 + 2T > C; p.splice site 209 + 2T > C
PTENChromosome 10, NC_000010.11c.802-1G > A; p.slice site 802-1G > ANot detected
SPENChromosome 1, NC_000001.11Not detectedc.2419C > T; p.R807C

Only selected alterations are shown (a full list of all reported alterations is included in the Supplemental Appendix). Alterations that changed between samples are shaded.

(ICB) Immune checkpoint blockade, (NA) not applicable, (FS) frameshift.

Next-generation DNA sequencing of brain tumor specimens (FoundationOne CDx, Cambridge, MA) collected before and after pembrolizumab therapy Only selected alterations are shown (a full list of all reported alterations is included in the Supplemental Appendix). Alterations that changed between samples are shaded. (ICB) Immune checkpoint blockade, (NA) not applicable, (FS) frameshift. The patient was then started on ICB therapy using pembrolizumab 200 mg intravenously every 3 wk. This resulted in a PSA decline of 79%, as well as a partial radiographic response in his metastatic lymphadenopathy. The patient's functional status also improved, with increased appetite and healthy weight gain. However, after his third dose of pembrolizumab, he developed confusion, expressive aphasia, and impaired coordination of his right hand. MRI of the brain showed multiple new and enlarging metastatic parenchymal brain lesions, with worsening vasogenic edema and slight midline shift (Fig. 1C,D). He was initiated on dexamethasone and underwent repeat craniotomy with excision of an enlarging tumor followed by brain-directed radiotherapy. This second tumor sample showed prostate adenocarcinoma with increased stromal content compared to the prior sample (Fig. 2B). Interestingly, despite clinical CNS progression, multiplex immunofluorescence and immunohistochemical studies revealed significantly increased numbers of CD8+ tumor-infiltrating T cells (Fig. 2D,F). The median density of CD8+ T cells located within the tumor epithelium increased from 5.6 cells/mm2 pretreatment to 51.5 cells/mm2 post-treatment (P < 0.0001) (Fig. 3A). The density of PD1+ cells also increased post-treatment (P = 0.005) (Fig. 3B). Conversely, macrophages decreased from a median density of 176.5 cells/mm2 to 56.2 cells/mm2 (P = 0.011) (Figs. 2H, 3C). Of note, assessment of the patient's prior stereotactic radiosurgery plans showed that the analyzed tumor was not previously encompassed within the radiation field.
Figure 3.

Quantification of cells positive for CD8 (A), PD1 (B), and CD68 (C) within the tumor epithelium, before and after treatment with pembrolizumab.

Quantification of cells positive for CD8 (A), PD1 (B), and CD68 (C) within the tumor epithelium, before and after treatment with pembrolizumab. We considered whether the tumor had acquired a genomic alteration that might alter the tumor immune contexture. Somatic DNA sequencing of the post-treatment brain tumor sample (FoundationOne CDx) revealed a new missense variant in NFKBIA (p.L187P) with high allele frequency (Table 1). NFKBIA encodes IκBα, which binds and inhibits nuclear localization and transcriptional activity of the NF-κB complex, and its inactivation leads to constitutive NF-κB activity (Taniguchi and Karin 2018). However, immunohistochemistry for the NF-κB subunit p65 did not show enhanced nuclear localization, indicating that this missense change was probably not inactivating (Supplemental Fig. S2). Therefore, the changes in tumor immune cell composition was attributed to pembrolizumab treatment. Given the clear ongoing extra-CNS response and the suggestion of an immune CNS response, the patient was continued on pembrolizumab for a total of 6 mo until he developed eventual PSA progression and worsening metastatic lymphadenopathy. At that time, he was initiated on docetaxel chemotherapy and experienced a PSA response as well as an objective response in lymph nodes, persisting for 3 mo. Unfortunately, he subsequently developed worsening neurologic symptoms caused by further progression of his brain metastases despite ongoing control of his extra-CNS disease. At that time, he opted for comfort care measures only and died several weeks later. He survived a total of 12 mo following the initial diagnosis of brain metastases.

DISCUSSION

We present a patient with the rare diagnosis of prostate cancer with parenchymal brain metastases. We propose that our patient is especially unique, as his tumor also exhibited the rare feature of dMMR. dMMR refers to loss of at least one of four enzymes (MLH1, PMS2, MSH2, or MSH6) that participates in correction of DNA nucleotide pairing errors, resulting in accumulation of hundreds-to-thousands of single-nucleotide substitutions as well as small insertions/deletions within the cancer cell genome. This hypermutated genome may lead to formation of mutation-associated neoantigens (MANAs) that can be recognized by the immune system as foreign. Indeed, solid tumors with dMMR were found to have high response rates to the PD-1 inhibitor pembrolizumab regardless of cancer histology, leading to U.S. Food and Drug Administration (FDA) approval of use for this indication (Le et al. 2017). However, only a small percentage of prostate cancers have dMMR, with estimates ranging from 2% to 4% (Abida et al. 2019; Antonarakis et al. 2019). The presence of these two rare diagnoses in our patient begs the question of whether they might be related. Interestingly, Sun et al. (2019) recently performed whole-exome sequencing on primary and metastatic brain tumors from 23 patients with colorectal cancer (CRC) and found that these brain metastases were enriched for mutational signatures of DNA damage repair (DDR) deficiency. This may suggest that extensive DNA damage may be advantageous for establishment of brain metastases. However, patients with dMMR primary CRC tumors do not appear to have higher rates of brain metastases, and one study suggested a trend toward a decreased risk of brain metastases in dMMR CRC (Prasanna et al. 2018). Therefore, it is unclear whether our patient's dMMR status contributed to his development of brain metastases. Of note, this patient's brain metastases also exhibited alterations in PTEN as well as NF1, which may support prior work suggesting a correlation between PTEN and NF1 inactivation and brain metastases in prostate cancer (Mota et al. 2019; Rodriguez et al. 2020). Prostate cancers with dMMR have higher densities of TILs compared with MMR-proficient tumors (Guedes et al. 2017), yet our patient's tumor had a strikingly low density of TILs despite the dMMR status. This may be related to its growth within the brain parenchyma, as primary brain tumors are well known to exhibit intratumoral depletion of lymphocytes and enrichment of M2 macrophages (Thorsson et al. 2019). Low baseline TIL density (Tumeh et al. 2014), along with JAK1/2 mutation (Shin et al. 2017) and PTEN loss (Vidotto et al. 2020), are associated with resistance to anti-PD1 therapy (Tumeh et al. 2014); thus one may have predicted that these lesions would not respond. Indeed, our patient exhibited swift clinical CNS progression while on pembrolizumab. However, close inspection of the post-treatment tumor sample showed increased TIL density and depletion of macrophages. This suggests that pembrolizumab stimulated an antitumor immune response; whether this response was sufficient to result in tumor killing is unclear. Tumors exhibiting radiographic enlargement due to immune cell infiltration and not due to cancer cell proliferation (so-called “pseudoprogression”) are well-described among CNS tumors (Brandsma et al. 2008) and among tumors treated with ICB (Jia et al. 2019). Pseudoprogression is definitively distinguished from true progression when the tumor is subsequently found to decrease in size despite no change in therapy. It is possible that pseudoprogression played a role in our patient's clinical course. Accurate noninvasive tests are needed to distinguish pseudoprogression from true progression; tests in development for this purpose include level of circulating tumor DNA (ctDNA) (Guibert et al. 2017; Lee et al. 2018), positron emission tomography (PET) using novel tracers such as fluoroethyl-tyrosine (FET) (Kebir et al. 2016), and MR assessment of hemodynamic alterations (Tsien et al. 2010). Of note, among patients with dMMR prostate cancer, high tumor frameshift mutation proportion (FSP) was associated with prolonged response to ICB in a prior study and is thought to be due to increased production of neoantigens (Sena et al. 2020). Despite a very low TIL density here, our patient's baseline tumor sample had a relatively high FSP of 22%, which may have facilitated a response to pembrolizumab. Among many cancer types, brain metastases exhibit variable responses to systemic therapy, perhaps owing to difficulty of agents penetrating the blood–brain barrier (Venur et al. 2018). A small study of 10 patients with high-grade glioma treated with pembrolizumab showed that pembrolizumab entered the cerebrospinal fluid (albeit at concentrations 0.009 times that of serum) and T cells isolated from cerebrospinal fluid (CSF) of these patients exhibited blockade of PD-1(Wang et al. 2020). Exciting work by Castro and Lowenstein suggests that tumor-specific immune responses in the CNS may be limited because of lack of dendritic cell antigen presentation, and adenoviral expression of Fms-like tyrosine kinase 3 ligand (FLT3-L) in CNS tumors to differentiate and recruit dendritic cells can lead to enhanced immune response within the CNS (Lowenstein and Castro 2018). This type of approach may be particularly effective to boost CNS responses in patients exhibiting systemic responses to ICB, as these patients have proven that their tumors are immunogenic within the extra-CNS compartment. In spite of our patient's extra-CNS progression on multiple systemic therapies, it was our inability to control his brain metastases that ultimately led to his demise. In fact, at the time of his death, he continued to exhibit extra-CNS disease control using docetaxel despite worsening neurologic symptoms due to increasing ICP. Among patients with prostate cancer, median overall survival after diagnosis of brain metastases is typically 2–6 mo, but can be improved if treated with surgical resection (Hatzoglou et al. 2014; Mota et al. 2019). In this case, our patient survived 12 mo following his diagnosis of brain metastases. Of note, his progressive brain metastases impeded entry onto a clinical trial of immunotherapy for patients with dMMR cancers who have progressed on pembrolizumab (namely, the combination of a PD-1 inhibitor plus a LAG-3 inhibitor). Thus, this case illustrates the need for more clinical trials for patients with CNS metastases, including enrollment of patients with active or progressing brain metastases. In summary, we report the case of a patient with mCRPC with parenchymal brain metastases and mismatch repair deficiency. This case provokes numerous questions regarding the interaction of tumor genetics, immune microenvironment, patterns of metastatic spread, and response to immunotherapy within and outside the CNS.

METHODS

DNA Sequencing

Targeted next-generation DNA sequencing of tumor samples was performed by Foundation Medicine using the FoundationOne CDx platform. A sequencing coverage table (Supplemental Table S2) is included in the Supplemental Data.

Immunohistochemistry

Immunohistochemistry for CD8 (Cell Marque 760-4250), PD-1 (Cell Marque 315M-96), CD163 (Novacastra NCL-CD163), MLH-1 (Ventana 790-5091), PMS2 (Ventana 790-5094), MSH2 (Ventana 790-5093), and MSH6 (Ventana 790-5092) were performed according to previous validated protocols in the Johns Hopkins CLIA-certified laboratory using the Ventana autostaining platform (Roche). Immunohistochemistry for FoxP3 (Abcam 20034, dilution 1:100) was performed with the OptiView DAB IHC Detection Kit (Roche) on a Ventana Discovery autostaining platform (Roche). Immunohistochemistry for NF-κB p65 Rabbit mAb (Cell Signaling 8242T, dilution 1:400) was performed with the OptiView DAB IHC Detection Kit (Roche) on a Ventana Discovery autostaining platform (Roche). A paraffin-embedded LNCaP cell line tissue microarray was used to validate the p65 immunostain. The immunohistochemistry stains were evaluated by two trained pathologists (D.C.S. and T.L.L.).

Multiplex Immunofluorescence

Automated mIF was performed as previously described (Giraldo et al. 2018; Davis et al. 2020). Briefly, slides were heated and dewaxed to remove any paraffin. Antigen retrieval was performed using ER2 followed by washing steps. Nonspecific staining was blocked using Blocking/Ab Diluent (Akoya Biosciences) followed by the first primary antibody (see position 1 in Supplemental Table S3). The corresponding polymer was applied followed by the tyramide signal amplification dye (Opal Automation Multiplex IHC Kit; Akoya Biosciences). Slides were heated to strip the primary antibody and polymer, washed, and blocked again. The process was repeated for positions 2–6. After the last step of antibody striping, the slides were stained for DAPI and coverslipped using ProLong Diamond Antifade Mountant (Life Technologies). Slides were scanned using the Vectra Polaris Quantitative Pathology Imaging System (Akoya Biosciences). A 10× (1 µm/px) whole-slide scan was acquired and used as a guide to select 20 high power field (HPF) for 20× image acquisition. These 20× HPF images were processed in Inform software (Akoya Biosciences) and exported to images with QPTIFF format.

Multiplex Immunofluorescence Image Analysis

The QPTIFF images were loaded into HALO (Indica Labs), and the tumor epithelium was manually annotated across 20 regions. The HighPlex FL V3.2.1 module of HALO was applied to identify cells with positive CD8, PD-1, and CD68 signals, and results were reported as positive cell densities (cells/mm2) for each region.

ADDITIONAL INFORMATION

Data Deposition and Access

Interpretation of the NFKBIA p.L187P variant was submitted to ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) under accession number VCV001170963.1. Consent was not obtained to make the patient's raw sequencing data publicly available.

Ethics Statement

This study was approved by the Johns Hopkins Institutional Review Board, and written informed consent for publication of this work was obtained from the spouse of the deceased patient.

Acknowledgments

We thank the laboratory of Sushant Kachhap for providing p65 KO LNCaP cells for antibody validation.

Author Contributions

L.A.S., T.L.L., and E.S.A. designed the study. D.C.S., E.L.E., and Q.Z. performed the experiments. L.A.S., D.C.S., and H.T. analyzed the data. T.L.L. and E.S.A. supervised the work. L.A.S. and E.S.A. wrote the manuscript. All authors reviewed and provided input for the manuscript.

Funding

This work was partially supported by the Patrick Walsh Prostate Cancer Research Fund (T.L.L. and E.S.A.), the National Institutes of Health Cancer Center Support Grant P30 CA006973, Department of Defense grants W81XWH-16-PCRP-CCRSA and W81XWH2010079, and the Bloomberg∼Kimmel Institute for Cancer Immunotherapy.

Competing Interest Statement

E.S.A. is a paid consultant/advisor to Janssen, Astellas, Sanofi, Dendreon, Pfizer, Amgen, Lilly, Bayer, AstraZeneca, Bristol-Myers Squibb, Clovis, and Merck; he has received research funding to his institution from Janssen, Johnson & Johnson, Sanofi, Dendreon, Genentech, Novartis, Tokai, Bristol Myers-Squibb, AstraZeneca, Clovis, and Merck; and he is the coinventor of an AR-V7 biomarker technology that has been licensed to QIAGEN. T.L.L. has received research funding from Roche, DeepBio and Myriad Genetics. The remaining authors report no conflicts of interest.

Referees

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Journal:  Eur Urol       Date:  2018-10-15       Impact factor: 20.096

8.  Distribution of metastatic sites in patients with prostate cancer: A population-based analysis.

Authors:  Giorgio Gandaglia; Firas Abdollah; Jonas Schiffmann; Vincent Trudeau; Shahrokh F Shariat; Simon P Kim; Paul Perrotte; Francesco Montorsi; Alberto Briganti; Quoc-Dien Trinh; Pierre I Karakiewicz; Maxine Sun
Journal:  Prostate       Date:  2013-10-16       Impact factor: 4.104

9.  PD-1 blockade induces responses by inhibiting adaptive immune resistance.

Authors:  Paul C Tumeh; Christina L Harview; Jennifer H Yearley; I Peter Shintaku; Emma J M Taylor; Lidia Robert; Bartosz Chmielowski; Marko Spasic; Gina Henry; Voicu Ciobanu; Alisha N West; Manuel Carmona; Christine Kivork; Elizabeth Seja; Grace Cherry; Antonio J Gutierrez; Tristan R Grogan; Christine Mateus; Gorana Tomasic; John A Glaspy; Ryan O Emerson; Harlan Robins; Robert H Pierce; David A Elashoff; Caroline Robert; Antoni Ribas
Journal:  Nature       Date:  2014-11-27       Impact factor: 49.962

10.  Tumor Frameshift Mutation Proportion Predicts Response to Immunotherapy in Mismatch Repair-Deficient Prostate Cancer.

Authors:  Laura A Sena; Julia Fountain; Pedro Isaacsson Velho; Su Jin Lim; Hao Wang; Emily Nizialek; Nityam Rathi; Roberto Nussenzveig; Benjamin L Maughan; Miguel Gonzalez Velez; Ryan Ashkar; Amanda C Larson; Colin C Pritchard; Nabil Adra; Alan H Bryce; Neeraj Agarwal; Drew M Pardoll; James R Eshleman; Tamara L Lotan; Emmanuel S Antonarakis
Journal:  Oncologist       Date:  2020-12-03       Impact factor: 5.837

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  2 in total

Review 1.  Prostate cancer immunotherapy: a review of recent advancements with novel treatment methods and efficacy.

Authors:  Ian Wang; Liankun Song; Beverly Y Wang; Arash Rezazadeh Kalebasty; Edward Uchio; Xiaolin Zi
Journal:  Am J Clin Exp Urol       Date:  2022-08-15

Review 2.  The Role of Histology-Agnostic Drugs in the Treatment of Metastatic Castration-Resistant Prostate Cancer.

Authors:  Giovanni Maria Iannantuono; Francesco Torino; Roberto Rosenfeld; Simona Guerriero; Manuela Carlucci; Stefano Sganga; Barbara Capotondi; Silvia Riondino; Mario Roselli
Journal:  Int J Mol Sci       Date:  2022-08-01       Impact factor: 6.208

  2 in total

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