Vésteinn Thorsson1, David L Gibbs2, Scott D Brown3, Denise Wolf4, Dante S Bortone5, Tai-Hsien Ou Yang6, Eduard Porta-Pardo7, Galen F Gao8, Christopher L Plaisier9, James A Eddy10, Elad Ziv11, Aedin C Culhane12, Evan O Paull13, I K Ashok Sivakumar14, Andrew J Gentles15, Raunaq Malhotra16, Farshad Farshidfar17, Antonio Colaprico18, Joel S Parker5, Lisle E Mose5, Nam Sy Vo19, Jianfang Liu20, Yuexin Liu19, Janet Rader21, Varsha Dhankani2, Sheila M Reynolds2, Reanne Bowlby3, Andrea Califano13, Andrew D Cherniack8, Dimitris Anastassiou6, Davide Bedognetti22, Younes Mokrab22, Aaron M Newman23, Arvind Rao19, Ken Chen19, Alexander Krasnitz24, Hai Hu20, Tathiane M Malta25, Houtan Noushmehr25, Chandra Sekhar Pedamallu26, Susan Bullman26, Akinyemi I Ojesina27, Andrew Lamb10, Wanding Zhou28, Hui Shen28, Toni K Choueiri26, John N Weinstein19, Justin Guinney10, Joel Saltz29, Robert A Holt3, Charles S Rabkin30, Alexander J Lazar31, Jonathan S Serody32, Elizabeth G Demicco33, Mary L Disis34, Benjamin G Vincent35, Ilya Shmulevich36. 1. Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA. Electronic address: vesteinn.thorsson@systemsbiology.org. 2. Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA. 3. Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC V5Z 4S6, Canada. 4. University of California, San Francisco, Box 0808, 2340 Sutter Street, S433, San Francisco, CA 94115, USA. 5. Lineberger Comprehensive Cancer Center, Curriculum in Bioinformatics and Computational Biology, University of North Carolina, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA. 6. Department of Systems Biology and Department of Electrical Engineering, Columbia University, New York, NY 10027, USA. 7. Barcelona Supercomputing Centre, c/Jordi Girona, 29, 08034 Barcelona, Spain; SBP Medical Discovery Institute, La Jolla, CA 92037, USA. 8. The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA 02142, USA. 9. Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA; School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ 85281, USA. 10. Sage Bionetworks, 2901 Third Ave, Suite 330, Seattle, WA 98121, USA. 11. Department of Medicine, Institute for Human Genetics, Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, 1450 3rd St, San Francisco, CA 94143, USA. 12. Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA. 13. Irving Cancer Research Center, Room 913,1130 St. Nicholas Avenue, New York, NY 10032, USA. 14. Department of Computer Science, Institute for Computational Medicine; Johns Hopkins University, Baltimore, MD 21218, USA. 15. Departments of Medicine and Biomedical Data Science, Stanford University, Stanford, CA 94305, USA. 16. Seven Bridges Genomics, Cambridge, MA 02142, USA. 17. Department of Oncology, University of Calgary, Calgary, AB T2N 4N1, Canada. 18. Universite libre de Bruxelles (ULB), Computer Science Department, Faculty of Sciences, Boulevard du Triomphe - CP212, 1050 Bruxelles, Belgium. 19. Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. 20. Chan Soon-Shiong Institute of Molecular Medicine at Windber, Windber, PA 15963, USA. 21. Medical College of Wisconsin, 9200 Wisconsin Avenue, Milwaukee, WI 53226 USA. 22. Division of Translational Medicine, Research Branch, Sidra Medical and Research Center, PO Box 26999, Doha, Qatar. 23. Institute for Stem Cell Biology and Regenerative Medicine and Department of Biomedical Data Science, Stanford University, Stanford, CA 94305, USA. 24. Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA. 25. Department of Neurosurgery, Henry Ford Hospital, Detroit, MI 48202, USA; Department of Genetics, Ribeirao Preto Medical School, University of São Paulo, São Paulo, Brazil. 26. Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA. 27. University of Alabama at Birmingham, Birmingham, AL 35294, USA. 28. Center for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA. 29. Department of Biomedical Informatics, Stony Brook Medicine, 100 Nicolls Rd, Stony Brook, NY 11794, USA. 30. Division of Cancer Epidemiology and Genetics, National Cancer Institute, 9609 Medical Center Dr., Bethesda, MD 20892, USA. 31. Departments of Pathology, Genomics Medicine and Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd-Unit 85, Houston, TX 77030, USA. 32. Department of Medicine and Microbiology and Lineberger Comprehensive Cancer Center, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA. 33. Mount Sinai Hospital, Department of Pathology and Laboratory Medicine, 600 University Ave., Toronto, ON M5G 1X5, Canada. 34. UW Medicine Cancer Vaccine Institute, 850 Republican Street, Brotman Building, 2nd Floor, Room 221, Box 358050, University of Washington, Seattle, WA 98109-4714, USA. 35. Lineberger Comprehensive Cancer Center, Curriculum in Bioinformatics and Computational Biology, University of North Carolina, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA. Electronic address: benjamin.vincent@unchealth.unc.edu. 36. Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA. Electronic address: ilya.shmulevich@systemsbiology.org.
Authors: Karsten Krug; Eric J Jaehnig; Shankha Satpathy; Lili Blumenberg; Alla Karpova; Meenakshi Anurag; George Miles; Philipp Mertins; Yifat Geffen; Lauren C Tang; David I Heiman; Song Cao; Yosef E Maruvka; Jonathan T Lei; Chen Huang; Ramani B Kothadia; Antonio Colaprico; Chet Birger; Jarey Wang; Yongchao Dou; Bo Wen; Zhiao Shi; Yuxing Liao; Maciej Wiznerowicz; Matthew A Wyczalkowski; Xi Steven Chen; Jacob J Kennedy; Amanda G Paulovich; Mathangi Thiagarajan; Christopher R Kinsinger; Tara Hiltke; Emily S Boja; Mehdi Mesri; Ana I Robles; Henry Rodriguez; Thomas F Westbrook; Li Ding; Gad Getz; Karl R Clauser; David Fenyö; Kelly V Ruggles; Bing Zhang; D R Mani; Steven A Carr; Matthew J Ellis; Michael A Gillette Journal: Cell Date: 2020-11-18 Impact factor: 41.582
Authors: Sarah E Johnstone; Alejandro Reyes; Yifeng Qi; Carmen Adriaens; Esmat Hegazi; Karin Pelka; Jonathan H Chen; Luli S Zou; Yotam Drier; Vivian Hecht; Noam Shoresh; Martin K Selig; Caleb A Lareau; Sowmya Iyer; Son C Nguyen; Eric F Joyce; Nir Hacohen; Rafael A Irizarry; Bin Zhang; Martin J Aryee; Bradley E Bernstein Journal: Cell Date: 2020-08-24 Impact factor: 41.582
Authors: Sushil Kumar; Zexian Zeng; Archis Bagati; Rong En Tay; Lionel A Sanz; Stella R Hartono; Yoshinaga Ito; Fieda Abderazzaq; Elodie Hatchi; Peng Jiang; Adam N R Cartwright; Olamide Olawoyin; Nathan D Mathewson; Jason W Pyrdol; Mamie Z Li; John G Doench; Matthew A Booker; Michael Y Tolstorukov; Stephen J Elledge; Frédéric Chédin; X Shirley Liu; Kai W Wucherpfennig Journal: Cancer Discov Date: 2021-03-11 Impact factor: 39.397