Literature DB >> 34138702

Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation: The M&Ms Challenge.

Victor M Campello, Polyxeni Gkontra, Cristian Izquierdo, Carlos Martin-Isla, Alireza Sojoudi, Peter M Full, Klaus Maier-Hein, Yao Zhang, Zhiqiang He, Jun Ma, Mario Parreno, Alberto Albiol, Fanwei Kong, Shawn C Shadden, Jorge Corral Acero, Vaanathi Sundaresan, Mina Saber, Mustafa Elattar, Hongwei Li, Bjoern Menze, Firas Khader, Christoph Haarburger, Cian M Scannell, Mitko Veta, Adam Carscadden, Kumaradevan Punithakumar, Xiao Liu, Sotirios A Tsaftaris, Xiaoqiong Huang, Xin Yang, Lei Li, Xiahai Zhuang, David Vilades, Martin L Descalzo, Andrea Guala, Lucia La Mura, Matthias G Friedrich, Ria Garg, Julie Lebel, Filipe Henriques, Mahir Karakas, Ersin Cavus, Steffen E Petersen, Sergio Escalera, Santi Segui, Jose F Rodriguez-Palomares, Karim Lekadir.   

Abstract

The emergence of deep learning has considerably advanced the state-of-the-art in cardiac magnetic resonance (CMR) segmentation. Many techniques have been proposed over the last few years, bringing the accuracy of automated segmentation close to human performance. However, these models have been all too often trained and validated using cardiac imaging samples from single clinical centres or homogeneous imaging protocols. This has prevented the development and validation of models that are generalizable across different clinical centres, imaging conditions or scanner vendors. To promote further research and scientific benchmarking in the field of generalizable deep learning for cardiac segmentation, this paper presents the results of the Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation (M&Ms) Challenge, which was recently organized as part of the MICCAI 2020 Conference. A total of 14 teams submitted different solutions to the problem, combining various baseline models, data augmentation strategies, and domain adaptation techniques. The obtained results indicate the importance of intensity-driven data augmentation, as well as the need for further research to improve generalizability towards unseen scanner vendors or new imaging protocols. Furthermore, we present a new resource of 375 heterogeneous CMR datasets acquired by using four different scanner vendors in six hospitals and three different countries (Spain, Canada and Germany), which we provide as open-access for the community to enable future research in the field.

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Year:  2021        PMID: 34138702     DOI: 10.1109/TMI.2021.3090082

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  10 in total

Review 1.  Cardiac MR: From Theory to Practice.

Authors:  Tevfik F Ismail; Wendy Strugnell; Chiara Coletti; Maša Božić-Iven; Sebastian Weingärtner; Kerstin Hammernik; Teresa Correia; Thomas Küstner
Journal:  Front Cardiovasc Med       Date:  2022-03-03

2.  The Medical Segmentation Decathlon.

Authors:  Michela Antonelli; Annika Reinke; Spyridon Bakas; Keyvan Farahani; Annette Kopp-Schneider; Bennett A Landman; Geert Litjens; Bjoern Menze; Olaf Ronneberger; Ronald M Summers; Bram van Ginneken; Michel Bilello; Patrick Bilic; Patrick F Christ; Richard K G Do; Marc J Gollub; Stephan H Heckers; Henkjan Huisman; William R Jarnagin; Maureen K McHugo; Sandy Napel; Jennifer S Golia Pernicka; Kawal Rhode; Catalina Tobon-Gomez; Eugene Vorontsov; James A Meakin; Sebastien Ourselin; Manuel Wiesenfarth; Pablo Arbeláez; Byeonguk Bae; Sihong Chen; Laura Daza; Jianjiang Feng; Baochun He; Fabian Isensee; Yuanfeng Ji; Fucang Jia; Ildoo Kim; Klaus Maier-Hein; Dorit Merhof; Akshay Pai; Beomhee Park; Mathias Perslev; Ramin Rezaiifar; Oliver Rippel; Ignacio Sarasua; Wei Shen; Jaemin Son; Christian Wachinger; Liansheng Wang; Yan Wang; Yingda Xia; Daguang Xu; Zhanwei Xu; Yefeng Zheng; Amber L Simpson; Lena Maier-Hein; M Jorge Cardoso
Journal:  Nat Commun       Date:  2022-07-15       Impact factor: 17.694

Review 3.  Multi-Site Infant Brain Segmentation Algorithms: The iSeg-2019 Challenge.

Authors:  Yue Sun; Kun Gao; Zhengwang Wu; Guannan Li; Xiaopeng Zong; Zhihao Lei; Ying Wei; Jun Ma; Xiaoping Yang; Xue Feng; Li Zhao; Trung Le Phan; Jitae Shin; Tao Zhong; Yu Zhang; Lequan Yu; Caizi Li; Ramesh Basnet; M Omair Ahmad; M N S Swamy; Wenao Ma; Qi Dou; Toan Duc Bui; Camilo Bermudez Noguera; Bennett Landman; Ian H Gotlib; Kathryn L Humphreys; Sarah Shultz; Longchuan Li; Sijie Niu; Weili Lin; Valerie Jewells; Dinggang Shen; Gang Li; Li Wang
Journal:  IEEE Trans Med Imaging       Date:  2021-04-30       Impact factor: 10.048

Review 4.  Artificial intelligence with deep learning in nuclear medicine and radiology.

Authors:  Milan Decuyper; Jens Maebe; Roel Van Holen; Stefaan Vandenberghe
Journal:  EJNMMI Phys       Date:  2021-12-11

5.  Federated learning for multi-center imaging diagnostics: a simulation study in cardiovascular disease.

Authors:  Akis Linardos; Kaisar Kushibar; Sean Walsh; Polyxeni Gkontra; Karim Lekadir
Journal:  Sci Rep       Date:  2022-03-03       Impact factor: 4.379

6.  Assessment of right ventricular size and function from cardiovascular magnetic resonance images using artificial intelligence.

Authors:  Shuo Wang; Daksh Chauhan; Hena Patel; Alborz Amir-Khalili; Isabel Ferreira da Silva; Alireza Sojoudi; Silke Friedrich; Amita Singh; Luis Landeras; Tamari Miller; Keith Ameyaw; Akhil Narang; Keigo Kawaji; Qiang Tang; Victor Mor-Avi; Amit R Patel
Journal:  J Cardiovasc Magn Reson       Date:  2022-04-11       Impact factor: 6.903

7.  DeepStrain Evidence of Asymptomatic Left Ventricular Diastolic and Systolic Dysfunction in Young Adults With Cardiac Risk Factors.

Authors:  Manuel A Morales; Gert J H Snel; Maaike van den Boomen; Ronald J H Borra; Vincent M van Deursen; Riemer H J A Slart; David Izquierdo-Garcia; Niek H J Prakken; Ciprian Catana
Journal:  Front Cardiovasc Med       Date:  2022-04-11

8.  CardiSort: a convolutional neural network for cross vendor automated sorting of cardiac MR images.

Authors:  Ruth P Lim; Stefan Kachel; Adriana D M Villa; Leighton Kearney; Nuno Bettencourt; Alistair A Young; Amedeo Chiribiri; Cian M Scannell
Journal:  Eur Radiol       Date:  2022-04-04       Impact factor: 7.034

9.  Minimising multi-centre radiomics variability through image normalisation: a pilot study.

Authors:  Víctor M Campello; Carlos Martín-Isla; Cristian Izquierdo; Andrea Guala; José F Rodríguez Palomares; David Viladés; Martín L Descalzo; Mahir Karakas; Ersin Çavuş; Zahra Raisi-Estabragh; Steffen E Petersen; Sergio Escalera; Santi Seguí; Karim Lekadir
Journal:  Sci Rep       Date:  2022-07-22       Impact factor: 4.996

10.  A domain adaptation benchmark for T1-weighted brain magnetic resonance image segmentation.

Authors:  Parisa Saat; Nikita Nogovitsyn; Muhammad Yusuf Hassan; Muhammad Athar Ganaie; Roberto Souza; Hadi Hemmati
Journal:  Front Neuroinform       Date:  2022-09-23       Impact factor: 3.739

  10 in total

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