| Literature DB >> 34134940 |
Ayis Pyrros1, Adam Eugene Flanders2, Jorge Mario Rodríguez-Fernández3, Andrew Chen4, Patrick Cole4, Daniel Wenzke5, Eric Hart6, Samuel Harford7, Jeanne Horowitz6, Paul Nikolaidis6, Nadir Muzaffar8, Viveka Boddipalli8, Jai Nebhrajani9, Nasir Siddiqui8, Melinda Willis8, Houshang Darabi7, Oluwasanmi Koyejo4, William Galanter9.
Abstract
RATIONALE ANDEntities:
Keywords: COVID-19; chest radiography; convolutional neural networks; deep learning; multi-task learning
Mesh:
Substances:
Year: 2021 PMID: 34134940 PMCID: PMC8139280 DOI: 10.1016/j.acra.2021.05.002
Source DB: PubMed Journal: Acad Radiol ISSN: 1076-6332 Impact factor: 3.173
Figure 1Flow diagram of retrospective cohort study. COVID-19 = coronavirus disease 2019, RT-PCR = reverse transcription-polymerase chain reaction.
Demographics and Findings of 413 Outpatients.
| Characteristics | Full Admission ( | No Full Admission ( | Odds Ratio (CI) | ||||
|---|---|---|---|---|---|---|---|
| Age, Mean (SD) | 60.5 | (12.9) | 48.4 | (16.0) | <0.0001 | ||
| Sex | 0.86 | ||||||
| Female | 23 | (45.1) | 168 | (46.4) | |||
| Male | 28 | (54.9) | 194 | (53.6) | |||
| Race | 0.47 | ||||||
| White | 22 | (43.1) | 200 | (55.2) | |||
| Hispanic | 12 | (23.5) | 81 | (22.4) | |||
| Other, Non-Hispanic | 8 | (15.7) | 38 | (10.5) | |||
| African American | 5 | (9.8) | 22 | (6.1) | |||
| Clinical and Radiological Features | |||||||
| BMI, Mean (SD) | 32.4 | (6.7) | 30.5 | (7.1) | 0.07 | ||
| A1C, Mean (SD) | 6.4 | (1.3) | 6.0 | (1.1) | 0.13 | ||
| Chest X-ray Opacity, Mean (SD) | 0.412 | (0.12) | 0.337 | (0.1) | 920 (63–13,600) | <0.0001 | |
| Chest X-ray Geo Score, Mean (SD) | 0.255 | (0.1) | 0.21 | (0.051) | 12,000 (240–60,000) | <0.0001 | |
| Variables Predicted by the Multi-Task CNN Model | |||||||
| Diabetes with Complications HCC18, mean (SD) | 0.332 | (0.2) | 0.161 | (0.2) | 36.2 (9.7–136) | <0.0001 | |
| Morbid obesity HCC22, Mean (SD) | 0.226 | (0.3) | 0.156 | (0.2) | 2.63 (0.94–7.3) | 0.065 | |
| CHF HCC85, Mean (SD) | 0.222 | (0.2) | 0.092 | (0.1) | 33.2 (7.9–140) | <0.0001 | |
| Cardiac Arrhythmias HCC96, Mean (SD) | 0.174 | (0.2) | 0.067 | (0.1) | 48.9 (9.0–265) | <0.0001 | |
| Vascular Disease HCC108, Mean (SD) | 0.372 | (0.2) | 0.218 | (0.2) | 14.1 (4.2–47.8) | <0.0001 | |
| COPD HCC111, mean (SD) | 0.143 | (0.2) | 0.075 | (0.1) | 10.2 (2.2–47.8) | 0.0032 | |
| Age, Mean (SD) | 62.0 | (10.1) | 51.9 | (13.4) | 1.05 (1.03–1.08) | <0.0001 | |
A1C, glycated haemoglobin; BMI, body mass index; CHF, congestive heart failure; CI, confidence interval; COPD, chronic obstructive pulmonary disease; COVID-19, coronavirus disease 2019; HCC, hierarchical condition category.
Multi-task CNN HCC-Based Comorbidity Predictions from a Randomized Test Cohort (n = 2,864) of Frontal Chest Radiographs, Compared to a Cohort of COVID-19 Patients (n = 413), based on EHR data.
| Variable | Disease Description | CNN Test Cohort | COVID+ Cohort | |||
|---|---|---|---|---|---|---|
| AUC | 95% CI | AUCCOVID | 95% CI | EHR HCCCount | ||
| HCC18 | Diabetes with Chronic Complications | 0.798 | 0.780–0.816 | 0.765 | 0.694–0.836 | 44 (10.7%) |
| HCC22 | Morbid Obesity | 0.927 | 0.912–0.942 | 0.910 | 0.878–0.948 | 39 (9.4%) |
| HCC85 | Congestive Heart Failure | 0.850 | 0.834–0.867 | 0.836 | 0.744–0.929 | 11 (2.7%) |
| HCC96 | Specified Heart Arrhythmias | 0.837 | 0.816–0.857 | 0.750 | 0.657–0.862 | 19 (4.6%) |
| HCC108 | Vascular Disease | 0.729 | 0.711–0.747 | 0.868 | 0.823–0.912 | 30 (7.3%) |
| HCC111 | Chronic Obstructive Pulmonary Disease | 0.836 | 0.818–0.854 | 0.845 | 0.709–0.981 | 7 (1.7%) |
| Total AUC (All Codes) | 0.856 | 0.850–0.862 | 0.850 | 0.820–0.879 | 150 (6%) | |
AUC, area under the curve; CNN, convolutional neural network; COVID-19, coronavirus disease 2019; HER, electronic health record; HCC, hierarchical condition category.
The EHR HCC count represents the number of unique patients with the HCC code in the COVID+ cohort.
Figure 2Chest radiograph (a) of a 63-year-old male patient with COVID-19 hospitalized for 7 days, and with a BMI of 26, demonstrating subtle ground glass opacities in a lower lung distribution, with increased geographic (0.34) and opacity scores (0.64). The integrated gradients saliency maps, with darker shades representing higher scores from the multi-task comorbidity HCC model: morbid obesity (HCC22; B), CHF (HCC85; C), cardiac arrhythmias (HCC96; D). Much of the activation seen is outside the lung parenchyma, with notable activation of the axillary soft tissue for obesity (b), and heart for CHF and cardiac arrhythmias (c, d). The activations for CHF and cardiac arrhythmias are very similar, but demonstrate subtle differences, with slightly greater activation at the left atrium and aortic knob (d), suggesting the associations of vascular disease and atrial fibrillation. BMI = body mass index, CHF = congestive heart failure, COVID-19 = coronavirus disease 2019, HCC = hierarchical condition category.
Figure 3ROC curves from binary classification logistic regressions of the combined HCC and geographic–opacity models (A, light grey, AUC = 0.796 (95% CI: 0.734–0.859), six HCC comorbidities (B, black, AUC = 0.768, 95% CI: 0.708–0.829), and geographic–opacity CNN scores (C, dark grey, AUC = 0.693, 95% CI: 0.611–0.776) for the prediction of prolonged hospitalization with oxygen supplementation. AUC = area under the ROC curve, CNN = convolutional neural network, HCC = hierarchical condition category, ROC = receiver operating characteristic.