| Literature DB >> 34133814 |
Vincent Estrade1, Michel Daudon2, Emmanuel Richard3, Jean-Christophe Bernhard1, Franck Bladou1, Grégoire Robert1, Baudouin Denis de Senneville4.
Abstract
OBJECTIVE: To assess automatic computer-aided in situ recognition of the morphological features of pure and mixed urinary stones using intra-operative digital endoscopic images acquired in a clinical setting.Entities:
Keywords: #EndoUrology; #KidneyStones; #UroStone; #Urology; aetiological lithiasis; automatic recognition; deep learning; endoscopic diagnosis; morpho-constitutional analysis of urinary stones
Mesh:
Substances:
Year: 2021 PMID: 34133814 PMCID: PMC9292712 DOI: 10.1111/bju.15515
Source DB: PubMed Journal: BJU Int ISSN: 1464-4096 Impact factor: 5.969
Fig. 1Representative automatic endoscopic stone recognition results obtained before laser fragmentation (surface image). Examples of both correctly (left panel) and misclassified images (right panel; type reported on far left is not recognised by network) are shown. In situ surface images (left image of each panel) are reported for each stone composition. Ia/calcium oxalate monohydrate, IIb/ calcium oxalate dihydrate and IIIb/uric acid pure morphologies are reported in first three rows. For each mixed stone (last two rows), a mixture of the corresponding pure morphologies is visible. Activation maps (right image of each panel) show areas where network concentrates attention.
Fig. 2Representative automatic endoscopic stone recognition results obtained after laser fragmentation (section images). Examples of both correctly (left panel) and misclassified images (right panel: type reported on far left is not recognised by network) are shown. In situ section images (left image of each panel) are reported for each stone composition. Ia/calcium oxalate monohydrate, IIb/calcium oxalate dihydrate and IIIb/uric acid pure morphologies are reported in first three rows. For each mixed stone (last two rows), a mixture of the corresponding pure morphologies is visible. Activation maps (right image of each panel) show areas where network concentrates attention.
Diagnostic performance of implemented deep convolutional neural network classifier for pure stones (i.e., Ia/calcium oxalate monohydrate, IIb/calcium oxalate dihydrate and IIIb/uric acid morphologies).
| Stone type | Accuracy, % | AUROC | Sensitivity, % | Specificity, % | PPV, % | NPV, % | FPR, % | FNR, % |
|---|---|---|---|---|---|---|---|---|
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| Ia | 90 ± 3 | 0.90 ± 0.03 | 91 ± 5 | 90 ± 4 | 92 ± 3 | 90 ± 4 | 10 ± 4 | 9 ± 5 |
| IIb | 93 ± 2 | 0.86 ± 0.04 | 77 ± 7 | 95 ± 2 | 76 ± 9 | 96 ± 1 | 5 ± 2 | 23 ± 7 |
| IIIb | 99 ± 1 | 0.98 ± 0.02 | 98 ± 5 | 99 ± 1 | 90 ± 8 | 100 ± 0 | 1 ± 1 | 2 ± 5 |
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| Ia | 94 ± 2 | 0.94 ± 0.02 | 94 ± 2 | 93 ± 5 | 94 ± 4 | 94 ± 3 | 7 ± 5 | 6 ± 2 |
| IIb | 94 ± 3 | 0.83 ± 0.09 | 69 ± 18 | 97 ± 2 | 77 ± 13 | 96 ± 3 | 3 ± 2 | 31 ± 18 |
| IIIb | 95 ± 2 | 0.78 ± 0.14 | 60 ± 30 | 97 ± 2 | 63 ± 27 | 97 ± 1 | 3 ± 2 | 40 ± 30 |
AUROC, area under the receiver operating characteristic curve; FNR, false‐negative rate; FPR, false predictive rate; NPV, negative predictive value; PPV, positive predictive value.
Results obtained using surface and section images are reported after cross‐validation (averaged indicators shown with standard deviations). Accuracies, sensitivities, specificities, PPVs, and NPVs shown in percentages.
Diagnostic performance of implemented deep convolutional neural network classifier for mixed stones (i.e., Ia/calcium oxalate monohydrate (COM) + IIb/calcium oxalate dihydrate and Ia/COM + IIIb/uric acid morphologies).
| Stone type | Predicted kidney type | Accuracy (%) | AUROC | Sensitivity (%) | Specificity (%) | PPV (%) | NPV (%) | FPR (%) | FNR (%) |
|---|---|---|---|---|---|---|---|---|---|
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| Ia + IIb | At least Ia | 89 ± 2 | 0.88 ± 0.03 | 84 ± 4 | 91 ± 2 | 85 ± 4 | 91 ± 2 | 9 ± 2 | 16 ± 4 |
| At least IIb | 90 ± 2 | 0.82 ± 0.03 | 70 ± 6 | 94 ± 2 | 70 ± 6 | 94 ± 1 | 6 ± 2 | 30 ± 6 | |
| Both Ia and IIb | 87 ± 3 | 0.78 ± 0.05 | 65 ± 10 | 92 ± 3 | 65 ± 8 | 92 ± 2 | 8 ± 3 | 35 ± 10 | |
| Ia + IIIb | At least Ia | 94 ± 1 | 0.93 ± 0.02 | 89 ± 4 | 96 ± 1 | 91 ± 3 | 96 ± 2 | 4 ± 1 | 11 ± 4 |
| At least IIIb | 98 ± 0 | 0.93 ± 0.04 | 86 ± 8 | 99 ± 0 | 87 ± 6 | 99 ± 0 | 1 ± 0 | 14 ± 8 | |
| Both Ia and IIIb | 98 ± 1 | 0.75 ± 0.14 | 50 ± 28 | 100 ± 1 | 71 ± 32 | 99 ± 1 | 0 ± 1 | 50 ± 28 | |
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| Ia + IIb | At least Ia | 91 ± 2 | 0.90 ± 0.02 | 86 ± 4 | 93 ± 2 | 86 ± 4 | 93 ± 2 | 7 ± 2 | 14 ± 4 |
| At least IIb | 91 ± 2 | 0.78 ± 0.06 | 60 ± 13 | 95 ± 1 | 64 ± 8 | 94 ± 2 | 5 ± 1 | 40 ± 13 | |
| Both Ia and IIb | 88 ± 2 | 0.72 ± 0.08 | 51 ± 17 | 93 ± 2 | 51 ± 10 | 93 ± 2 | 7 ± 2 | 49 ± 17 | |
| Ia + IIIb | At least Ia | 94 ± 2 | 0.93 ± 0.02 | 91 ± 3 | 95 ± 2 | 90 ± 4 | 96 ± 1 | 5 ± 2 | 9 ± 3 |
| At least IIIb | 95 ± 2 | 0.83 ± 0.09 | 69 ± 18 | 97 ± 2 | 73 ± 13 | 97 ± 1 | 3 ± 2 | 31 ± 18 | |
| Both Ia and IIIb | 94 ± 2 | 0.85 ± 0.09 | 74 ± 18 | 97 ± 2 | 74 ± 16 | 97 ± 2 | 3 ± 2 | 26 ± 18 | |
AUROC, area under the receiver operating characteristic curve; FNR, false‐negative rate; FPR, false‐predictive rate; NPV, negative predictive value; PPV, positive predictive value.
Test metrics evaluated using surface and section images when at least one pure morphology is predicted (N.B. mixed stones were composed of two pure morphologies in this study) and when both morphologies were predicted.
Fig. 3Confusion matrices for implemented deep convolutional neural network classifier obtained using the surface (A) and section (B) datasets. Each column of the matrices represents an actual stone type, while each line represents a predicted type. Green diagonal cells show number (averaged by cross‐validation) and percentage of correct predictions by trained network. Red off‐diagonal cells correspond to wrongly predicted observations. Column on far right shows positive predictive value (green numbers) and false discovery rate (red numbers). Bottom row shows sensitivity (green numbers) and the false‐negative rate (red numbers). Blue cell bottom right shows overall percentage of correct (green) and incorrect (red) predictions.