Literature DB >> 34133149

Quantitative Chemical Proteomics Reveals Interspecies Variations on Binding Schemes of L-FABP with Perfluorooctanesulfonate.

Jiajun Han1, Jesse Fu1, Jianxian Sun1, David Ross Hall1, Diwen Yang1, Donovan Blatz2, Keith Houck3, Carla Ng4, Jon Doering5, Carlie LaLone6, Hui Peng1,7.   

Abstract

Evaluating interspecies toxicity variation is a long-standing challenge for chemical hazard assessment. This study developed a quantitative interspecies thermal shift assay (QITSA) for in situ, quantitative, and modest-throughput investigation of chemical-protein interactions in cell and tissue samples across species. By using liver fatty acid binding protein (L-FABP) as a case study, the QITSA method was benchmarked with six per- and polyfluoroalkyl substances, and thermal shifts (ΔTm) were inversely related to their dissociation constants (R2 = 0.98). The QITSA can also distinguish binding modes of chemicals exemplified by palmitic acid. The QITSA was applied to determine the interactions between perfluorooctanesulfonate (PFOS) and L-FABP in liver cells or tissues from humans, mice, rats, and zebrafish. The largest thermal stability enhancement by PFOS was observed for human L-FABP followed by the mouse, rat, and zebrafish. While endogenous ligands were revealed to partially contribute to the large interspecies variation, recombinant proteins were employed to confirm the high binding affinity of PFOS to human L-FABP, compared to the rat and mouse. This study implemented an experimental strategy to characterize chemical-protein interactions across species, and future application of QITSA to other chemical contaminants is of great interest.

Entities:  

Keywords:  dissociation constant; interspecies toxicities; protein folding; proteomics; thermal stability

Mesh:

Substances:

Year:  2021        PMID: 34133149      PMCID: PMC9189739          DOI: 10.1021/acs.est.1c00509

Source DB:  PubMed          Journal:  Environ Sci Technol        ISSN: 0013-936X            Impact factor:   11.357


  58 in total

1.  Comparative assessment of large-scale data sets of protein-protein interactions.

Authors:  Christian von Mering; Roland Krause; Berend Snel; Michael Cornell; Stephen G Oliver; Stanley Fields; Peer Bork
Journal:  Nature       Date:  2002-05-08       Impact factor: 49.962

2.  Evolutionary Exploitation of Vertebrate Peroxisome Proliferator-Activated Receptor γ by Organotins.

Authors:  Ana M F Capitão; Mónica S Lopes-Marques; Yoichiro Ishii; Raquel Ruivo; Elza S S Fonseca; Inês Páscoa; Rodolfo P Jorge; Mélanie A G Barbosa; Youhei Hiromori; Takayuki Miyagi; Tsuyoshi Nakanishi; Miguel M Santos; L Filipe C Castro
Journal:  Environ Sci Technol       Date:  2018-11-19       Impact factor: 9.028

3.  Fatty Acid-binding Proteins 1 and 2 Differentially Modulate the Activation of Peroxisome Proliferator-activated Receptor α in a Ligand-selective Manner.

Authors:  Maria L R Hughes; Bonan Liu; Michelle L Halls; Kylie M Wagstaff; Rahul Patil; Tony Velkov; David A Jans; Nigel W Bunnett; Martin J Scanlon; Christopher J H Porter
Journal:  J Biol Chem       Date:  2015-04-06       Impact factor: 5.157

4.  A nuclear magnetic resonance-based structural rationale for contrasting stoichiometry and ligand binding site(s) in fatty acid-binding proteins.

Authors:  Yan He; Rima Estephan; Xiaomin Yang; Adriana Vela; Hsin Wang; Cédric Bernard; Ruth E Stark
Journal:  Biochemistry       Date:  2011-02-02       Impact factor: 3.162

5.  In Vitro and In Silico Evaluations of Binding Affinities of Perfluoroalkyl Substances to Baikal Seal and Human Peroxisome Proliferator-Activated Receptor α.

Authors:  Hiroshi Ishibashi; Masashi Hirano; Eun-Young Kim; Hisato Iwata
Journal:  Environ Sci Technol       Date:  2019-01-31       Impact factor: 9.028

6.  Selective cooperation between fatty acid binding proteins and peroxisome proliferator-activated receptors in regulating transcription.

Authors:  Nguan-Soon Tan; Natacha S Shaw; Nicolas Vinckenbosch; Peng Liu; Rubina Yasmin; Béatrice Desvergne; Walter Wahli; Noa Noy
Journal:  Mol Cell Biol       Date:  2002-07       Impact factor: 4.272

7.  Disposition of perfluorinated acid isomers in Sprague-Dawley rats; part 2: subchronic dose.

Authors:  Amila O De Silva; Jonathan P Benskin; Leah J Martin; Gilles Arsenault; Robert McCrindle; Nicole Riddell; Jonathan W Martin; Scott A Mabury
Journal:  Environ Toxicol Chem       Date:  2008-10-21       Impact factor: 3.742

8.  Monohaloacetic Acids and Monohaloacetamides Attack Distinct Cellular Proteome Thiols.

Authors:  David Ross Hall; Kirsten Yeung; Hui Peng
Journal:  Environ Sci Technol       Date:  2020-11-10       Impact factor: 9.028

9.  Predicting Relative Protein Affinity of Novel Per- and Polyfluoroalkyl Substances (PFASs) by An Efficient Molecular Dynamics Approach.

Authors:  Weixiao Cheng; Carla A Ng
Journal:  Environ Sci Technol       Date:  2018-06-27       Impact factor: 9.028

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