| Literature DB >> 34132740 |
Ciaran Welsh1, David P Nickerson2, Anand Rampadarath2, Maxwell L Neal3, Herbert M Sauro1, John H Gennari4.
Abstract
SUMMARY: As the number and complexity of biosimulation models grows, so do demands for tools that can help users better understand models and make those models more findable, shareable and reproducible. Consistent model annotation is a step toward these goals. Both models and tools are written in a variety of different languages; thus, the community has recognized the need for standard, language-independent methods for annotation. Based on the Computational Modeling in Biology Network (COMBINE) community consensus, we introduce an open-source, cross-platform software library for semantic annotation of models. AVAILABILITY: libOmexMeta is freely available at https://github.com/sys-bio/libOmexMeta under the Apache License 2.0. A live demonstration is at github.com/sys-bio/pyomexmeta-binder-notebook. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.Entities:
Year: 2021 PMID: 34132740 PMCID: PMC8665746 DOI: 10.1093/bioinformatics/btab445
Source DB: PubMed Journal: Bioinformatics ISSN: 1367-4803 Impact factor: 6.931